easyGWAS - FAQ

Tutorials

Tutorial 1: How to perform Genome-Wide Association Studies (GWAS) with easyGWAS?
Tutorial 2: How to store GWAS in my profile?
Tutorial 3: How to share Projects with other users?

File format

What does the Genotype PLINK file format look like?
What do the Phenotype and Covariate PLINK file formats look like?
What does the Gene Annotation File Format look like?
What does the Summary Statistics file look like?
Problems with upload of phenotype data?

Analysis

Pitfalls when conducting comparative analyses or meta-analyses of GWAS results

Downloads

How to download publicly available data?
How to download summary results of GWAS?
How to Download Phenotypes?

Publications

How to cite easyGWAS?
How to add Publications to my private GWAS or data?

Data Upload

How to upload new Genotype data to easyGWAS?
How to upload new Phenotypic data to an existing dataset?
How to upload new Covariate data to an existing dataset?
How to import public phenotype data from AraPheno?

REST

How to retrieve a list of available species?
How to retrieve available datasets from easyGWAS?
How to retrieve sample information and meta-information?
How to retrieve phenotypes and its meta-information?
How to retrieve covariates and its meta-information?

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