General Information

Name: RAL_427
ID: 427
Species: Drosophila melanogaster
Dataset: Drosophila Genetic Reference Panel (DGRP, Mackay et al.)
Country: None
Region: None
Latitude: None
Longitude: None
Source: http://dgrp.gnets.ncsu.edu/freeze1/
Site: None
Description:

Additional Meta Information


Meta Information Field Meta Information Value
sequenced Roche 454, Illumnia
wolbachia_status no
description Illumina sequence reads were aligned to the wMel reference genome using BWA. Since not all genomes or runs had paired end data, single-ended reads were aligned using default parameters. Wolbachia infection status was determined by attempting to produce a wMel reference-based consensus sequence from each individual line and by examining the mean read depth coverage over the reference-based alignment. When a consensus sequence could not be generated for an individual line using the standard SAMtools pileup pipeline and the mean coverage per bp was estimated to be <1 a line was scored as uninfected. Conversely, when a consensus sequence could be produced and mean coverage was >1, lines were scored as infected with Wolbachia.

Publications


authorstitlepub yearjournalvolumepagesdoi
Trudy Mackay et al.The Drosophila melanogaster Genetic Reference Panel2012Nature482173-17810.1038/nature10811