General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Population structure of the Brachypodium species complex and genome wide association of agronomic traits in response to climate Experiment Type Genome-wide Association Study
esayGWAS-ID:f0cd9565-3ea0-4927-8568-1d3a4058cc42Owner:fergsc
Date Started:Feb. 14, 2018, 3:49 a.m.Date Finished:Feb. 14, 2018, 3:52 a.m.

Selected Species and Dataset
Selected Species: Brachypodium distachyon
Selected Dataset: Subspecies A
Selected Gene Annotation Set: None

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.0
SNP encoding: Additive Selected Principle Components:0

Selected Phenotype
Phenotype Name: NPQMax 2 2015 Selected Transformation:None
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 2057816 Number of SNPs after Filtering:1853843
Number of Samples before Filtering: 63 Number of Samples after Filtering: 63
AIC Null-Model: -582.79 AICc Null-Model:-582.72
BIC Null-Model: -580.65
Variance Explained by the Null Model: 0.33

Publications


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548