| General Information of GWAS |
| Project: | Population structure of the Brachypodium species complex and genome wide association of agronomic traits in response to climate | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | d8ec53c0-94ee-4e25-aee4-f4c66f552d00 | Owner: | fergsc |
| Date Started: | Feb. 14, 2018, 3:23 a.m. | Date Finished: | Feb. 14, 2018, 3:25 a.m. |
| Selected Species: | Brachypodium distachyon |
| Selected Dataset: | Subspecies A |
| Selected Gene Annotation Set: | None |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.0 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
Selected Phenotype
| Phenotype Name: | Huan 13Nov 2015 | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
|
Algorithm Details
| Number of SNPs before Filtering: | 2057816 | Number of SNPs after Filtering: | 1853843 |
| Number of Samples before Filtering: | 63 | Number of Samples after Filtering: | 63 |
| AIC Null-Model: | -14.67 | AICc Null-Model: | -14.60 |
| BIC Null-Model: | -12.53 | ||
| Variance Explained by the Null Model: | 0.34 |
Top 10 SNPs (Bonferroni Correction, 0.05)
