General Information of GWAS |
Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. annuus | Experiment Type | Genome-wide Association Study |
esayGWAS-ID: | b2678c13-1f40-4c87-a9ea-2a9175595c58 | Owner: | RiesebergLab |
Date Started: | Sept. 25, 2019, 6:58 p.m. | Date Finished: | Sept. 25, 2019, 9:28 p.m. |
Selected Species: | Helianthus annuus |
Selected Dataset: | wild Helianthus annuus, SNPs remapped to HA412 |
Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
SNP encoding: | Additive | Selected Principle Components: | 3 |
Phenotype Name: | Petiole main veins colour | Selected Transformation: | None |
Selected Algorithm: | EMMAX | Histogram: |
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Number of SNPs before Filtering: | 4887920 | Number of SNPs after Filtering: | 2669368 |
Number of Samples before Filtering: | 614 | Number of Samples after Filtering: | 614 |
AIC Null-Model: | 1686.80 | AICc Null-Model: | 1686.90 |
BIC Null-Model: | 1708.90 | ||
Variance Explained by the Null Model: | 0.24 |