| General Information of GWAS |
| Project: | Linking genotype and phenotype in P. pacificus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | a9de022e-644b-4e00-a4c7-fcead8b713e1 | Owner: | dgrimm |
| Date Started: | Oct. 26, 2015, 5:17 p.m. | Date Finished: | Oct. 26, 2015, 5:22 p.m. |
| Selected Species: | Pristionchus pacificus |
| Selected Dataset: | Linking genotype and phenotype in P. pacificus (McGaughran et. al.) |
| Selected Gene Annotation Set: | Linking genotype and phenotype in P. pacificus Gene Annotation Set |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.1 |
| SNP encoding: | Additive | Selected Principle Components: | 0 |
| Used unique SNPs only to compute Realized Relationship Kernel: | True |
Selected Phenotype
| Phenotype Name: | pH 20 5 | Selected Transformation: | SQRT |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 2135350 | Number of SNPs after Filtering: | 870876 |
| Number of Samples before Filtering: | 149 | Number of Samples after Filtering: | 149 |
| AIC Null-Model: | 315.42 | AICc Null-Model: | 316.21 |
| BIC Null-Model: | 336.44 | ||
| Variance Explained by the Null Model: | 0.02 |
Top 10 SNPs (Bonferroni Correction, 0.05)
