General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. argophyllus Experiment Type Genome-wide Association Study
esayGWAS-ID:490d9342-b862-4599-8a0e-c9cb213b85f5Owner:RiesebergLab
Date Started:March 22, 2020, 2:36 a.m.Date Finished:March 22, 2020, 3:01 a.m.

Selected Species and Dataset
Selected Species: Helianthus argophyllus
Selected Dataset: H. argophyllus, SNPs remapped to HA412-HOv2
Selected Gene Annotation Set: HA412-HOv2 Eugene v1

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.05
SNP encoding: Additive Selected Principle Components:3

Selected Phenotype
Phenotype Name: Leaf width mid-height Selected Transformation:None
Selected Algorithm: EMMAX Histogram:
Algorithm Details
Number of SNPs before Filtering: 4676707 Number of SNPs after Filtering:2207757
Number of Samples before Filtering: 285 Number of Samples after Filtering: 285
AIC Null-Model: 2489.33 AICc Null-Model:2489.55
BIC Null-Model: 2507.59
Variance Explained by the Null Model: 5.8e-03

Publications


authorstitlepub yearjournalvolumepagesdoi
Hyun Kang et al.Variance component model to account for sample structure in genome-wide association studies2010Nature Genetics42348-35410.1038/ng.548
Marco Todesco et al.Massive haplotypes underlie ecotypic differentiation in sunflowers2020NatureNAN-A10.1038/s41586-020-2467-6