General Information

Name: Arabidopsis thaliana
NCBI Taxid: 3702
Description: Arabidopsis thaliana is a plant. In biological science it is used as a model organism.

Available Datasets

Dataset NameBuild#Samples#SNPs#Chromosomes#Phenotypes#CovariatesSharedPrivateOwner
AtPolyDB (call method 75, Horton et al.)TAIR9130721405151070dgrimm
80 genomes data (Cao et al.)TAIR9801438752500dgrimm
1001 Genomes DataTAIR10113569735655360dgrimm
F1-Hybrids (Seymour et. al. 2016, PNAS) F13722047535200dgrimm

Available Gene-Annotation Sets

Gene Annotation Set NameNumber of Genes
Gene Annotations (TAIR9)28412
Gene Annotations (TAIR10)28496

Chromosome Identifier

Chromosome ID Chromosome Name Start Position End Position
Chr1 Chr1 1 30427671
Chr2 Chr2 1 19698289
Chr3 Chr3 1 23459830
Chr4 Chr4 1 18585056
Chr5 Chr5 1 26975502

Publications


authorstitlepub yearjournalvolumepagesdoi
Matthew Horton et al.Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel2012Nature Genetics44212-21610.1038/ng.1042
Susanna Atwell et al.Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines2010Nature465627-63110.1038/nature08800
Jun Cao et al.Whole-genome sequencing of multiple Arabidopsis thaliana populations2011Nature Genetics43956-96310.1038/ng.911
Robert J. Schmitz et al.Patterns of population epigenomic diversity2013Nature495193-19810.1038/nature11968
Quan Long et al.Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden2013Nat Genet45884-89010.1038/ng.2678
The 1001 Genomes Consortium et al.1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana2016CellNAN-A10.1016/j.cell.2016.05.063
Danelle K. Seymour et al.Genetic architecture of nonadditive inheritance inArabidopsis thalianahybrids2016Proceedings of the National Academy of Sciences113E7317-E732610.1073/pnas.1615268113
Fran├žois Vasseur et al.Adaptive diversification of growth allometry in the plantArabidopsis thaliana2018Proceedings of the National Academy of Sciences1153416-342110.1073/pnas.1709141115