easyGWAS - Public Data

Phenotype ID	Phenotype Name	Scoring	variation type	#Samples
AT_P_60	FT Duration GH	Number of days between appearance of the first flower and the senescence of the last flower	continuous	147
AT_P_61	LC Duration GH	Number of days between germination and plant complete senescence	continuous	147
AT_P_63	MT GH	Number of days between last flower senescence and complete plant senescence	continuous	147
AT_P_64	RP GH	Reproduction period: number of days between the appearance of the first flower and the plant complete senescence	continuous	147
AT_P_39	0W	Number of days required for the bolt height to reach 5cm	continuous	137
AT_P_48	0W GH LN	Leaf number was scored as the number of rosette leaves and the number of cauline leaves when the bolt reached 5cm	continuous	135
AT_P_41	4W	Number of days required for the bolt height to reach 5cm	continuous	119
AT_P_273	Vern Growth	Vegetative growth rate during vernalization was estimated as the increment of cm2 leaf area per day between each of the three time points for which leaf area was measured	continuous	110
AT_P_274	After Vern Growth	Vegetative growth rate after vernalization was estimated as the increment of cm2 leaf area per day between each of the three time points for which leaf area was measured	continuous	110
AT_P_280	Seed bank 133-91	Genotypes consistently decreased their percentage of germination between 91 and 133 days of dry storage. The time point for this sudden reduction in germination rate was scored by the slope between germination percentages at these two time points	continuous	110
AT_P_281	Storage 7 days	Primary dormancy was measured as the progressive increase of germination rate measured after 7 days of dry storage	continuous	110
AT_P_282	Storage 28 days	Primary dormancy was measured as the progressive increase of germination rate measured after 28 days of dry storage	continuous	110
AT_P_283	Storage 56 days	Primary dormancy was measured as the progressive increase of germination rate measured after 56 days of dry storage	continuous	110
AT_P_279	DSDS50	Number of days of seed dry storage required to reach 50% germination, or DSDS50 value (Alonso-Blanco et al., 2003)	continuous	109
AT1P106	Seedling Growth	Seedling growth rate was given by leaf area divided by the number of days of growth since sowing ( in cm2/day)	continuous	100
AT_P_186	Bacterial titer	Following inoculation into leaf tissues, the titers of bacteria were measured at 0 and 4 days. Bacterial titres were measured from hole-punched leaf disks ground in 200μL of 10 mM MgSO4. Measurements were expressed as colony forming units per unit area and replicated in triplicate.	continuous	95
AT_P_75	FW	Lesioning measured by fresh weight	continuous	95
AT_P_76	DW	Lesioning measured by dry weight	continuous	95
AT_P_77	LES	Lesioning is the presence in older leaves of necrotic spots, that spread to the whole leaf. Lesioned accessions were divided in three subgroups (mild, intermediate and severe) according to the severity of lesioning	binary	95
AT_P_78	YEL	Yellowing is a precocious,more diffused leaf chlorosis.Accessions were divided in three subgroups (mild, intermediate and severe) according to the severity of the yellowing.	binary	95
AT_P_79	LY	Presence of lesioning and yellowing.	binary	95
AT_P_158	Silique 16	The length of 5 siliques was measured for each accession after growth had concluded	categorical	95
AT_P_159	Silique 22	The length of 5 siliques was measured for each accession after growth had concluded	categorical	95
AT_P_183	Trichome avg C	Measurements were collected from leaf disks removed from the 11th leaf of plants that had been treated with 0.6ml of a water control (C). Trichome density was calculated as the trichome number per disk divided by the disk area	continuous	94
AT_P_184	Trichome avg JA	Measurements were collected from leaf disks removed from the 11th leaf of plants that had been treated with 0.6 ml of a 0.45mM solution of jasmonic acid (Sigma J-2500) in water (JA). Trichome density was calculated as the trichome number per disk divided by the disk area	continuous	94

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