[{"species_id":2,"species_name":"Drosophila melanogaster","dataset_id":3,"dataset_name":"Drosophila Genetic Reference Panel (DGRP, Mackay et al.)","phenotype_id":"DM2P0","phenotype_name":"Starvation Stress Female","phenotype_description":"","variation_type":"continuous","number_samples":166,"shapiro_test_statistic":0.9658841490745544,"shapiro_p_value":0.0004180714604444802,"phenotype_category":"","phenotype_scoring":"Resistance to starvation stress was assessed by placing 10 same-sex, two day-old flies in culture vials containing non-nutritive medium (1.5% agar and 5ml water), and scoring survival every eight hours until all flies were dead. There were five replicate vials/sex/line.","phenotype_source":"http://dgrp.gnets.ncsu.edu/freeze1/Phenotypes/Starvation_Resistance/"},{"species_id":2,"species_name":"Drosophila melanogaster","dataset_id":3,"dataset_name":"Drosophila Genetic Reference Panel (DGRP, Mackay et al.)","phenotype_id":"DM2P1","phenotype_name":"Chill Coma Recovery Female","phenotype_description":"","variation_type":"continuous","number_samples":160,"shapiro_test_statistic":0.7498036026954651,"shapiro_p_value":3.2368197291438245e-15,"phenotype_category":"","phenotype_scoring":"Chill coma recovery was measured by transferring three to seven day-old flies without anesthesia to empty vials, and placing them on ice for three hours. Flies were transferred to room temperature, and the time it took for each individual to right itself and stand on its legs was recorded. There were 50 flies/sex/line.","phenotype_source":"http://dgrp.gnets.ncsu.edu/freeze1/Phenotypes/Chillcoma/"},{"species_id":2,"species_name":"Drosophila melanogaster","dataset_id":3,"dataset_name":"Drosophila Genetic Reference Panel (DGRP, Mackay et al.)","phenotype_id":"DM2P2","phenotype_name":"Startle Response Female","phenotype_description":"","variation_type":"continuous","number_samples":167,"shapiro_test_statistic":0.9831987023353577,"shapiro_p_value":0.0410502627491951,"phenotype_category":"","phenotype_scoring":"Startle response was measured by placing single three to seven day-old adult flies, collected under CO2 exposure, into vials containing 5ml culture medium, and leaving them overnight to acclimate to their new environment. On the next day, between 8am and 12pm (2 – 6 hours after lights on), each fly was subjected to a mechanical disturbance with a gentle tap, and the total amount of time the fly was active in the 45 seconds immediately following the disturbance was recorded. There were two replicate measurements (20 flies/sex/replicate) per line. The replicates for each line were assessed on different days.","phenotype_source":"http://dgrp.gnets.ncsu.edu/freeze1/Phenotypes/Startle_Response/"},{"species_id":2,"species_name":"Drosophila melanogaster","dataset_id":3,"dataset_name":"Drosophila Genetic Reference Panel (DGRP, Mackay et al.)","phenotype_id":"DM2P3","phenotype_name":"Startle Response Male","phenotype_description":"","variation_type":"continuous","number_samples":167,"shapiro_test_statistic":0.9843147993087769,"shapiro_p_value":0.05683376267552376,"phenotype_category":"","phenotype_scoring":"Startle response was measured by placing single three to seven day-old adult flies, collected under CO2 exposure, into vials containing 5ml culture medium, and leaving them overnight to acclimate to their new environment. On the next day, between 8am and 12pm (2 – 6 hours after lights on), each fly was subjected to a mechanical disturbance with a gentle tap, and the total amount of time the fly was active in the 45 seconds immediately following the disturbance was recorded. There were two replicate measurements (20 flies/sex/replicate) per line. The replicates for each line were assessed on different days.","phenotype_source":"http://dgrp.gnets.ncsu.edu/freeze1/Phenotypes/Startle_Response/"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_43","phenotype_name":"FLC","phenotype_description":"","variation_type":"continuous","number_samples":167,"shapiro_test_statistic":0.8006992340087891,"shapiro_p_value":8.07949288527364e-14,"phenotype_category":"flowering","phenotype_scoring":"RNA was extracted from leaves after 4 wks of growth. FLC gene expression levels were determined by Northern hybridization quantified relative to $Beta;-TUBULIN expression","phenotype_source":"Caroline Dean, Department of Cell and Development Biology, John Innes Centre, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_3","phenotype_name":"SD","phenotype_description":"","variation_type":"continuous","number_samples":162,"shapiro_test_statistic":0.7498025298118591,"shapiro_p_value":2.5641533845212686e-15,"phenotype_category":"flowering","phenotype_scoring":"Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200","phenotype_source":"M. Aranzana, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2005."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_60","phenotype_name":"FT Duration GH","phenotype_description":"","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.9195573329925537,"shapiro_p_value":2.5095485511883453e-07,"phenotype_category":"development","phenotype_scoring":"Number of days between appearance of the first flower and the senescence of the last flower","phenotype_source":"Fabrice Roux, Laboratoire de Genetique et Evolution des Populations Vegetales, Universite des Sciences et Technologies de Lille, France."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_6","phenotype_name":"FT16","phenotype_description":"","variation_type":"continuous","number_samples":193,"shapiro_test_statistic":0.7587180137634277,"shapiro_p_value":1.691324419435253e-16,"phenotype_category":"flowering","phenotype_scoring":"Plants were checked bi-weekly for presence of first buds, and the average flowering time of 4 plants of the same accession were collected","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_168","phenotype_name":"Chlorosis 16","phenotype_description":"","variation_type":"binary","number_samples":176,"shapiro_test_statistic":0.6356697082519531,"shapiro_p_value":3.348866559315075e-19,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 5wks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_273","phenotype_name":"Vern Growth","phenotype_description":"","variation_type":"continuous","number_samples":110,"shapiro_test_statistic":0.8949825763702393,"shapiro_p_value":2.9495700459847285e-07,"phenotype_category":"development","phenotype_scoring":"Vegetative growth rate during vernalization was estimated as the increment of cm2 leaf area per day between each of the three time points for which leaf area was measured","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_274","phenotype_name":"After Vern Growth","phenotype_description":"","variation_type":"continuous","number_samples":110,"shapiro_test_statistic":0.9497237801551819,"shapiro_p_value":0.00040123058715835214,"phenotype_category":"development","phenotype_scoring":"Vegetative growth rate after vernalization was estimated as the increment of cm2 leaf area per day between each of the three time points for which leaf area was measured","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_277","phenotype_name":"Secondary Dormancy","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.8513652086257935,"shapiro_p_value":3.2129690907822805e-08,"phenotype_category":"development","phenotype_scoring":"Secondary dormancy was given by the slope between the germination percentages of non-dormant seeds after one and six weeks of cold treatment. Viability of non germinating seeds after cold treatment was confirmed as described in Cadman et al., 2006","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_278","phenotype_name":"Germ in dark","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.8902308344841003,"shapiro_p_value":1.0856666676772875e-06,"phenotype_category":"development","phenotype_scoring":"The ability to germinate in the dark at 4°C was measured as the percentage of non dormant seeds that can germinate during 1-week long cold exposure, in the absence of light","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_279","phenotype_name":"DSDS50","phenotype_description":"","variation_type":"continuous","number_samples":109,"shapiro_test_statistic":0.8036627769470215,"shapiro_p_value":9.48170084114075e-11,"phenotype_category":"development","phenotype_scoring":"Number of days of seed dry storage required to reach 50% germination, or DSDS50 value (Alonso-Blanco et al., 2003)","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_280","phenotype_name":"Seed bank 133-91","phenotype_description":"","variation_type":"continuous","number_samples":110,"shapiro_test_statistic":0.7126075029373169,"shapiro_p_value":2.2533320695461434e-13,"phenotype_category":"development","phenotype_scoring":"Genotypes consistently decreased their percentage of germination between 91 and 133 days of dry storage. The time point for this sudden reduction in germination rate was scored by the slope between germination percentages at these two time points","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_282","phenotype_name":"Storage 28 days","phenotype_description":"","variation_type":"continuous","number_samples":110,"shapiro_test_statistic":0.7564263343811035,"shapiro_p_value":3.198700852802272e-12,"phenotype_category":"development","phenotype_scoring":"Primary dormancy was measured as the progressive increase of germination rate measured after 28 days of dry storage","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_283","phenotype_name":"Storage 56 days","phenotype_description":"","variation_type":"continuous","number_samples":110,"shapiro_test_statistic":0.855556845664978,"shapiro_p_value":5.806955361009614e-09,"phenotype_category":"development","phenotype_scoring":"Primary dormancy was measured as the progressive increase of germination rate measured after 56 days of dry storage","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_1","phenotype_name":"LD","phenotype_description":"","variation_type":"continuous","number_samples":167,"shapiro_test_statistic":0.6662865281105042,"shapiro_p_value":6.028524150740049e-18,"phenotype_category":"flowering","phenotype_scoring":"Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200","phenotype_source":"M. Aranzana, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2005."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_2","phenotype_name":"LDV","phenotype_description":"","variation_type":"continuous","number_samples":168,"shapiro_test_statistic":0.8802013397216797,"shapiro_p_value":2.324507392126307e-10,"phenotype_category":"flowering","phenotype_scoring":"Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200","phenotype_source":"M. Aranzana, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2005."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_4","phenotype_name":"SDV","phenotype_description":"","variation_type":"continuous","number_samples":159,"shapiro_test_statistic":0.712600827217102,"shapiro_p_value":2.868195437421726e-16,"phenotype_category":"flowering","phenotype_scoring":"Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200","phenotype_source":"M. Aranzana, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2005."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_5","phenotype_name":"FT10","phenotype_description":"","variation_type":"continuous","number_samples":194,"shapiro_test_statistic":0.8877220749855042,"shapiro_p_value":7.092900572436278e-11,"phenotype_category":"flowering","phenotype_scoring":"Plants were checked bi-weekly for presence of first buds, and the average flowering time of 4 plants of the same accession were collected","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_8","phenotype_name":"Seed Dormancy","phenotype_description":"","variation_type":"continuous","number_samples":83,"shapiro_test_statistic":0.8784109950065613,"shapiro_p_value":1.150490902546153e-06,"phenotype_category":"development","phenotype_scoring":"Number of days of seed dry storage required to reach 50% germination, or DSDS50 value (Alonso-Blanco et al., 2003). The measurement for each genotype was calculated as the average value across all available replicates","phenotype_source":"Chunlao Tang, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_9","phenotype_name":"Emco5","phenotype_description":"","variation_type":"binary","number_samples":86,"shapiro_test_statistic":0.48714131116867065,"shapiro_p_value":8.241165238058944e-16,"phenotype_category":"defense","phenotype_scoring":"All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications","phenotype_source":"Adnane Nemri, Sainsbury Laboratory, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_10","phenotype_name":"Emwa1","phenotype_description":"","variation_type":"binary","number_samples":85,"shapiro_test_statistic":0.6138506531715393,"shapiro_p_value":1.2868287165013204e-13,"phenotype_category":"defense","phenotype_scoring":"All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications","phenotype_source":"Adnane Nemri, Sainsbury Laboratory, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_11","phenotype_name":"Emoy*","phenotype_description":"","variation_type":"binary","number_samples":76,"shapiro_test_statistic":0.6341982483863831,"shapiro_p_value":1.8234541480921518e-12,"phenotype_category":"defense","phenotype_scoring":"All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications","phenotype_source":"Adnane Nemri, Sainsbury Laboratory, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_12","phenotype_name":"Hiks1","phenotype_description":"","variation_type":"binary","number_samples":84,"shapiro_test_statistic":0.6195205450057983,"shapiro_p_value":1.9898405839713362e-13,"phenotype_category":"defense","phenotype_scoring":"All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications","phenotype_source":"Adnane Nemri, Sainsbury Laboratory, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_13","phenotype_name":"Noco2","phenotype_description":"","variation_type":"binary","number_samples":87,"shapiro_test_statistic":0.632522463798523,"shapiro_p_value":1.9695960899561438e-13,"phenotype_category":"defense","phenotype_scoring":"All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications","phenotype_source":"Adnane Nemri, Sainsbury Laboratory, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_15","phenotype_name":"B11","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9812065958976746,"shapiro_p_value":0.20123155415058136,"phenotype_category":"ion concentration","phenotype_scoring":"Boron concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_16","phenotype_name":"Na23","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.7990867495536804,"shapiro_p_value":6.299165078438307e-10,"phenotype_category":"ion concentration","phenotype_scoring":"Sodium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_17","phenotype_name":"Mg25","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9874399900436401,"shapiro_p_value":0.5212103724479675,"phenotype_category":"ion concentration","phenotype_scoring":"Magnesium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_18","phenotype_name":"P31","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.980158805847168,"shapiro_p_value":0.16925589740276337,"phenotype_category":"ion concentration","phenotype_scoring":"Phosphorus concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_19","phenotype_name":"S34","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9826400279998779,"shapiro_p_value":0.25400859117507935,"phenotype_category":"ion concentration","phenotype_scoring":"Sulfur concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_20","phenotype_name":"K39","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9612197279930115,"shapiro_p_value":0.007387827150523663,"phenotype_category":"ion concentration","phenotype_scoring":"Potassium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_21","phenotype_name":"Ca43","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9833422899246216,"shapiro_p_value":0.2841068506240845,"phenotype_category":"ion concentration","phenotype_scoring":"Calcium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_22","phenotype_name":"Mn55","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9610227942466736,"shapiro_p_value":0.007162153255194426,"phenotype_category":"ion concentration","phenotype_scoring":"Manganese concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_23","phenotype_name":"Fe56","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9877798557281494,"shapiro_p_value":0.5453007221221924,"phenotype_category":"ion concentration","phenotype_scoring":"Iron concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_24","phenotype_name":"Co59","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9511488676071167,"shapiro_p_value":0.0015994989080354571,"phenotype_category":"ion concentration","phenotype_scoring":"Cobalt concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_25","phenotype_name":"Ni60","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9728316068649292,"shapiro_p_value":0.04931311681866646,"phenotype_category":"ion concentration","phenotype_scoring":"Nickel concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_26","phenotype_name":"Cu65","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9846146106719971,"shapiro_p_value":0.3463746905326843,"phenotype_category":"ion concentration","phenotype_scoring":"Copper concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_27","phenotype_name":"Zn66","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9898178577423096,"shapiro_p_value":0.6973978877067566,"phenotype_category":"ion concentration","phenotype_scoring":"Zinc concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_28","phenotype_name":"As75","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9600325226783752,"shapiro_p_value":0.006131921894848347,"phenotype_category":"ion concentration","phenotype_scoring":"Arsenic concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). 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were scored by eye for disease symptom using a scale from 0 (no visible symptom) to 10 (leaves collapse and turn yellow), with an increment of 1.","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_68","phenotype_name":"As CFU2","phenotype_description":"","variation_type":"continuous","number_samples":175,"shapiro_test_statistic":0.9854180216789246,"shapiro_p_value":0.06534263491630554,"phenotype_category":"defense","phenotype_scoring":"In planta bacterial growth (number of CFU / leaf area) of the P. viridiflava strain was individually measured as described in Goss and Bergelson 2006","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis 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10 (leaves collapse and turn yellow), with an increment of 1.","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_72","phenotype_name":"At2 CFU2","phenotype_description":"","variation_type":"continuous","number_samples":175,"shapiro_test_statistic":0.9798189997673035,"shapiro_p_value":0.012098055332899094,"phenotype_category":"defense","phenotype_scoring":"In planta bacterial growth (number of CFU / leaf area) of the P. viridiflava strain was individually measured as described in Goss and Bergelson 2006","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et 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16","phenotype_description":"","variation_type":"categorical","number_samples":95,"shapiro_test_statistic":0.9202378392219543,"shapiro_p_value":2.3002101443125866e-05,"phenotype_category":"development","phenotype_scoring":"The length of 5 siliques was measured for each accession after growth had concluded","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_159","phenotype_name":"Silique 22","phenotype_description":"","variation_type":"categorical","number_samples":95,"shapiro_test_statistic":0.9067641496658325,"shapiro_p_value":4.927578629576601e-06,"phenotype_category":"development","phenotype_scoring":"The length of 5 siliques was measured for each accession after growth had concluded","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_161","phenotype_name":"Germ 10","phenotype_description":"","variation_type":"categorical","number_samples":177,"shapiro_test_statistic":0.6370377540588379,"shapiro_p_value":3.19630602002674e-19,"phenotype_category":"development","phenotype_scoring":"Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_163","phenotype_name":"Germ 22","phenotype_description":"","variation_type":"categorical","number_samples":177,"shapiro_test_statistic":0.5503764748573303,"shapiro_p_value":3.472793401594577e-21,"phenotype_category":"development","phenotype_scoring":"Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_164","phenotype_name":"Width 10","phenotype_description":"","variation_type":"continuous","number_samples":176,"shapiro_test_statistic":0.8923383951187134,"shapiro_p_value":5.536496816560543e-10,"phenotype_category":"development","phenotype_scoring":"The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 8 weeks post germination","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_165","phenotype_name":"Width 16","phenotype_description":"","variation_type":"continuous","number_samples":175,"shapiro_test_statistic":0.9780979156494141,"shapiro_p_value":0.007322757039219141,"phenotype_category":"development","phenotype_scoring":"The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 5 weeks post germination","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_166","phenotype_name":"Width 22","phenotype_description":"","variation_type":"continuous","number_samples":175,"shapiro_test_statistic":0.9884805083274841,"shapiro_p_value":0.16536080837249756,"phenotype_category":"development","phenotype_scoring":"The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 5 weeks post germination","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_167","phenotype_name":"Chlorosis 10","phenotype_description":"","variation_type":"binary","number_samples":177,"shapiro_test_statistic":0.4377358555793762,"shapiro_p_value":2.399554734918558e-23,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 8wks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_169","phenotype_name":"Chlorosis 22","phenotype_description":"","variation_type":"binary","number_samples":176,"shapiro_test_statistic":0.6132795810699463,"shapiro_p_value":9.741669884885208e-20,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 5wks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_171","phenotype_name":"Anthocyanin 16","phenotype_description":"","variation_type":"binary","number_samples":176,"shapiro_test_statistic":0.6210216283798218,"shapiro_p_value":1.4837628493382654e-19,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 5wks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_172","phenotype_name":"Anthocyanin 22","phenotype_description":"","variation_type":"binary","number_samples":177,"shapiro_test_statistic":0.6079291105270386,"shapiro_p_value":6.440160061873647e-20,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 5wks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_173","phenotype_name":"Leaf serr 10","phenotype_description":"","variation_type":"categorical","number_samples":174,"shapiro_test_statistic":0.892798900604248,"shapiro_p_value":6.926410001106831e-10,"phenotype_category":"development","phenotype_scoring":"Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 8 weeks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_174","phenotype_name":"Leaf serr 16","phenotype_description":"","variation_type":"categorical","number_samples":176,"shapiro_test_statistic":0.8939950466156006,"shapiro_p_value":6.905239713361766e-10,"phenotype_category":"development","phenotype_scoring":"Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 5 weeks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_175","phenotype_name":"Leaf serr 22","phenotype_description":"","variation_type":"categorical","number_samples":176,"shapiro_test_statistic":0.885812520980835,"shapiro_p_value":2.3675150728763583e-10,"phenotype_category":"development","phenotype_scoring":"Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 5 weeks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_176","phenotype_name":"Leaf roll 10","phenotype_description":"","variation_type":"binary","number_samples":177,"shapiro_test_statistic":0.6312794089317322,"shapiro_p_value":2.310870954340724e-19,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of rolled leaves in all 4 plants / accession at 8 weeks growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":2,"species_name":"Drosophila melanogaster","dataset_id":3,"dataset_name":"Drosophila Genetic Reference Panel (DGRP, Mackay et al.)","phenotype_id":"DM2P4","phenotype_name":"Chill Coma Recovery Male","phenotype_description":"","variation_type":"continuous","number_samples":160,"shapiro_test_statistic":0.8629846572875977,"shapiro_p_value":6.608882885394962e-11,"phenotype_category":"","phenotype_scoring":"Chill coma recovery was measured by transferring three to seven day-old flies without anesthesia to empty vials, and placing them on ice for three hours. Flies were transferred to room temperature, and the time it took for each individual to right itself and stand on its legs was recorded. There were 50 flies/sex/line.","phenotype_source":"http://dgrp.gnets.ncsu.edu/freeze1/Phenotypes/Chillcoma/"},{"species_id":2,"species_name":"Drosophila melanogaster","dataset_id":3,"dataset_name":"Drosophila Genetic Reference Panel (DGRP, Mackay et al.)","phenotype_id":"DM2P5","phenotype_name":"Starvation Stress Male","phenotype_description":"","variation_type":"continuous","number_samples":166,"shapiro_test_statistic":0.9877048134803772,"shapiro_p_value":0.15513211488723755,"phenotype_category":"","phenotype_scoring":"Resistance to starvation stress was assessed by placing 10 same-sex, two day-old flies in culture vials containing non-nutritive medium (1.5% agar and 5ml water), and scoring survival every eight hours until all flies were dead. There were five replicate vials/sex/line.","phenotype_source":"http://dgrp.gnets.ncsu.edu/freeze1/Phenotypes/Starvation_Resistance/"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT1P106","phenotype_name":"Seedling Growth","phenotype_description":"","variation_type":"continuous","number_samples":100,"shapiro_test_statistic":0.9894328117370605,"shapiro_p_value":0.6189188361167908,"phenotype_category":"development","phenotype_scoring":"Seedling growth rate was given by leaf area divided by the number of days of growth since sowing ( in cm2/day)","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":108,"species_name":"Brachypodium distachyon","dataset_id":218,"dataset_name":"Subspecies A","phenotype_id":"Bd108P48","phenotype_name":"NPQMax 2 2015","phenotype_description":null,"variation_type":"continuous","number_samples":63,"shapiro_test_statistic":0.978281497955322,"shapiro_p_value":0.328722089529037,"phenotype_category":null,"phenotype_scoring":null,"phenotype_source":"None"},{"species_id":5,"species_name":"Pristionchus pacificus","dataset_id":5,"dataset_name":"Linking genotype and phenotype in P. pacificus (McGaughran et. al.)","phenotype_id":"PP5P1","phenotype_name":"Bordering","phenotype_description":"The assay for bordering evaluates the behaviour of nematodes in relation to oxygen preference based on the distribution of the animals across a bacterial lawn. The border of the bacterial lawn is thickest and consumes more oxygen. In consequence the oxygen concentration there is 5% lower than in the rest of the lawn. Samples with a preference for low oxygen levels show a higher number of animals at the border, behaviour called “bordering”. To test bordering behaviour among samples, the number of bordering animals after 3h incubation on a bacterial lawn, was evaluated.","variation_type":"binary","number_samples":149,"shapiro_test_statistic":0.518625259399414,"shapiro_p_value":4.12142966386745e-20,"phenotype_category":"","phenotype_scoring":"","phenotype_source":""},{"species_id":5,"species_name":"Pristionchus pacificus","dataset_id":5,"dataset_name":"Linking genotype and phenotype in P. pacificus (McGaughran et. al.)","phenotype_id":"PP5P0","phenotype_name":"pH 20 5","phenotype_description":"The assay for this phenotype measured mortality of nematodes after 24h incubation in a solution of pH 5.","variation_type":"categorical","number_samples":149,"shapiro_test_statistic":0.438902735710144,"shapiro_p_value":1.58090512294097e-21,"phenotype_category":"","phenotype_scoring":"","phenotype_source":""},{"species_id":5,"species_name":"Pristionchus pacificus","dataset_id":5,"dataset_name":"Linking genotype and phenotype in P. pacificus (McGaughran et. al.)","phenotype_id":"PP5P2","phenotype_name":"Heat Tolerance","phenotype_description":"To assay heat tolerance among nematodes, samples were incubated at 30°C for seven days. A sample was designated as high temperature tolerant if it gave rise to fertile offspring after this time.","variation_type":"binary","number_samples":149,"shapiro_test_statistic":0.459352970123291,"shapiro_p_value":3.52172832418983e-21,"phenotype_category":"","phenotype_scoring":"","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_7","phenotype_name":"FT22","phenotype_description":"","variation_type":"continuous","number_samples":193,"shapiro_test_statistic":0.6491847038269043,"shapiro_p_value":9.536073497400299e-20,"phenotype_category":"flowering","phenotype_scoring":"Plants were checked bi-weekly for presence of first buds, and the average flowering time of 4 plants of the same accession were collected","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_281","phenotype_name":"Storage 7 days","phenotype_description":"","variation_type":"continuous","number_samples":110,"shapiro_test_statistic":0.5697503089904785,"shapiro_p_value":1.989284008150816e-16,"phenotype_category":"development","phenotype_scoring":"Primary dormancy was measured as the progressive increase of germination rate measured after 7 days of dry storage","phenotype_source":"Juliette de Meaux, MPI Koln, 2009"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_14","phenotype_name":"Li7","phenotype_description":"","variation_type":"continuous","number_samples":93,"shapiro_test_statistic":0.9767442941665649,"shapiro_p_value":0.09544353187084198,"phenotype_category":"ion concentration","phenotype_scoring":"Lithium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008","phenotype_source":"Ivan Baxter and David E Salt, Purdue University, West Lafayette, Indiana, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_32","phenotype_name":"avrPphB","phenotype_description":"","variation_type":"binary","number_samples":90,"shapiro_test_statistic":0.6362379193305969,"shapiro_p_value":1.328427792031059e-13,"phenotype_category":"defense","phenotype_scoring":"Following inoculation of two leaves per plant with 0.1 ml of 10 -8 cfu/ml bacteria in 10 mM MgSO4 buffer using a blunt-tipped syringe, leaf collapse was scored at 20 hrs and again at 24 hrs after inoculation. A positive score at either time point was deemed a hypersensitive response","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_46","phenotype_name":"8W GH LN","phenotype_description":"","variation_type":"continuous","number_samples":163,"shapiro_test_statistic":0.7444519996643066,"shapiro_p_value":1.554368138649738e-15,"phenotype_category":"flowering","phenotype_scoring":"Leaf number was scored as the number of rosette leaves and the number of cauline leaves when the bolt reached 5cm","phenotype_source":"Caroline Dean, Department of Cell and Development Biology, John Innes Centre, Norwich, UK."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_66","phenotype_name":"At1 CFU2","phenotype_description":"","variation_type":"continuous","number_samples":175,"shapiro_test_statistic":0.9849187731742859,"shapiro_p_value":0.05610591918230057,"phenotype_category":"defense","phenotype_scoring":"In planta bacterial growth (number of CFU / leaf area) of the P. viridiflava strain was individually measured as described in Goss and Bergelson 2006","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_75","phenotype_name":"FW","phenotype_description":"","variation_type":"continuous","number_samples":95,"shapiro_test_statistic":0.9543057084083557,"shapiro_p_value":0.002236471977084875,"phenotype_category":"development","phenotype_scoring":"Lesioning measured by fresh weight","phenotype_source":"Detlef Weigel, Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tubingen, Germany."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_162","phenotype_name":"Germ 16","phenotype_description":"","variation_type":"categorical","number_samples":176,"shapiro_test_statistic":0.44668734073638916,"shapiro_p_value":3.9783034844869984e-23,"phenotype_category":"development","phenotype_scoring":"Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_170","phenotype_name":"Anthocyanin 10","phenotype_description":"","variation_type":"binary","number_samples":177,"shapiro_test_statistic":0.4740222096443176,"shapiro_p_value":1.0879675517462728e-22,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 8wks of growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_177","phenotype_name":"Leaf roll 16","phenotype_description":"","variation_type":"binary","number_samples":176,"shapiro_test_statistic":0.5006319284439087,"shapiro_p_value":3.9773208162345827e-22,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of rolled leaves in all 4 plants / accession at 5 weeks growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_178","phenotype_name":"Leaf roll 22","phenotype_description":"","variation_type":"binary","number_samples":176,"shapiro_test_statistic":0.4614167809486389,"shapiro_p_value":7.328076047396276e-23,"phenotype_category":"development","phenotype_scoring":"Results expressed as binary data, determined by the presence (1) or absence (0) of rolled leaves in all 4 plants / accession at 5 weeks growth","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_179","phenotype_name":"Rosette Erect 22","phenotype_description":"","variation_type":"categorical","number_samples":176,"shapiro_test_statistic":0.6399184465408325,"shapiro_p_value":4.2602228804590886e-19,"phenotype_category":"development","phenotype_scoring":"(22°C was the only temperature at which this phenotype was frequently observed). Results were expressed as binary data, determined by the central rosette being erect (1) or not (0) in all 4 plants / accession phenotyped at 5 weeks post germination","phenotype_source":"Susanna Atwell, Molecular and Computational Biology, University of Southern California, Los Angeles, CA -2007."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_182","phenotype_name":"Hypocotyl length","phenotype_description":"","variation_type":"continuous","number_samples":89,"shapiro_test_statistic":0.9840450286865234,"shapiro_p_value":0.3467980921268463,"phenotype_category":"development","phenotype_scoring":"After seven days growth under the photocycle and thermocycle treatment,plants were flattened directly on the agar and imaged on a flatbed scanner. Hypocotyl lengths were determined using NIH Image","phenotype_source":"Todd Michael and Joanne Chory, Salk institute for Biological Studies, La Jolla."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_183","phenotype_name":"Trichome avg C","phenotype_description":"","variation_type":"continuous","number_samples":94,"shapiro_test_statistic":0.9181303381919861,"shapiro_p_value":1.970701850950718e-05,"phenotype_category":"defense","phenotype_scoring":"Measurements were collected from leaf disks removed from the 11th leaf of plants that had been treated with 0.6ml of a water control (C). Trichome density was calculated as the trichome number per disk divided by the disk area","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_184","phenotype_name":"Trichome avg JA","phenotype_description":"","variation_type":"continuous","number_samples":94,"shapiro_test_statistic":0.8943910598754883,"shapiro_p_value":1.4783864799028379e-06,"phenotype_category":"defense","phenotype_scoring":"Measurements were collected from leaf disks removed from the 11th leaf of plants that had been treated with 0.6 ml of a 0.45mM solution of jasmonic acid (Sigma J-2500) in water (JA). Trichome density was calculated as the trichome number per disk divided by the disk area","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_185","phenotype_name":"Aphid number","phenotype_description":"","variation_type":"continuous","number_samples":94,"shapiro_test_statistic":0.9380825161933899,"shapiro_p_value":0.00023850637080613524,"phenotype_category":"defense","phenotype_scoring":"On day 25 of growth,two alate females of the common peach aphid, Myzus persicae,were placed on each of four plants of each of the 96 genotypes. Nine days later, the number of offspring produced by these aphids on each plant was recorded.","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":1,"dataset_name":"AtPolyDB (call method 75, Horton et al.)","phenotype_id":"AT_P_186","phenotype_name":"Bacterial titer","phenotype_description":"","variation_type":"continuous","number_samples":95,"shapiro_test_statistic":0.9636516571044922,"shapiro_p_value":0.009731626138091087,"phenotype_category":"defense","phenotype_scoring":"Following inoculation into leaf tissues, the titers of bacteria were measured at 0 and 4 days. Bacterial titres were measured from hole-punched leaf disks ground in 200μL of 10 mM MgSO4. Measurements were expressed as colony forming units per unit area and replicated in triplicate.","phenotype_source":"Joy Bergelson, Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, USA."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6701","phenotype_name":"DTF","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.991925179958344,"shapiro_p_value":0.0408861115574837,"phenotype_category":"","phenotype_scoring":"Plants were subsequently phenotyped for days to first open flower (DTF).","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6694","phenotype_name":"Perimeter Day 29","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.983719170093536,"shapiro_p_value":0.000332725001499057,"phenotype_category":"","phenotype_scoring":"Images of each tray were taken at day 29. From these images the following measurements were extracted using a custom ImageJ macro: perimeter day 29","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6702","phenotype_name":"Area Day 21 (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.985135495662689,"shapiro_p_value":0.000717285613063723,"phenotype_category":"","phenotype_scoring":"MPH of area day 21 was calculated as the distance of the hybrid phenotype from the midparent value, or mean of the two parental genotypes.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6709","phenotype_name":"Perimeter Day 29 (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.981720626354218,"shapiro_p_value":0.000117531257274095,"phenotype_category":"","phenotype_scoring":"MPH of perimeter day 29 was calculated as the distance of the hybrid phenotype from the midparent value, or mean of the two parental genotypes.","phenotype_source":"None"},{"species_id":5,"species_name":"Pristionchus pacificus","dataset_id":26,"dataset_name":"Htt_223_strains_unix","phenotype_id":"PP5P90","phenotype_name":"Htt 212 strains cladeC","phenotype_description":"","variation_type":"binary","number_samples":90,"shapiro_test_statistic":0.363398909568787,"shapiro_p_value":6.42415636591804e-18,"phenotype_category":"","phenotype_scoring":"Scored at Htt (1) Ltt (0) meaning High Temperature tolerant (able to give rise to fertile offspring at 30 degrees) and Ltt Low Temperature tolerant (not able to give rise to fertile offspring at 30 degrees).","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5947","phenotype_name":"DTF2","phenotype_description":"","variation_type":"continuous","number_samples":931,"shapiro_test_statistic":0.950116991996765,"shapiro_p_value":3.27836889219835e-17,"phenotype_category":"","phenotype_scoring":"Flowering time was scored as days until the inflorescence stem elongated to 1 cm","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5946","phenotype_name":"DTF1","phenotype_description":"","variation_type":"continuous","number_samples":936,"shapiro_test_statistic":0.956497669219971,"shapiro_p_value":4.84889145792967e-16,"phenotype_category":"","phenotype_scoring":"Flowering time was scored as days until the emergence of visible flowering buds in the center of the rosette from time of sowing","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5948","phenotype_name":"DTF3","phenotype_description":"","variation_type":"continuous","number_samples":923,"shapiro_test_statistic":0.956311225891113,"shapiro_p_value":5.96740534692167e-16,"phenotype_category":"","phenotype_scoring":"Flowering time was scored as days until first open flower","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5949","phenotype_name":"RL","phenotype_description":"","variation_type":"continuous","number_samples":850,"shapiro_test_statistic":0.985386788845062,"shapiro_p_value":1.70353430917203e-07,"phenotype_category":"","phenotype_scoring":"Rosette leaf number","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5950","phenotype_name":"CL","phenotype_description":"","variation_type":"continuous","number_samples":904,"shapiro_test_statistic":0.941104829311371,"shapiro_p_value":1.84249601080573e-18,"phenotype_category":"","phenotype_scoring":"Cauline leaf number","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5951","phenotype_name":"Diameter","phenotype_description":"","variation_type":"continuous","number_samples":656,"shapiro_test_statistic":0.99098140001297,"shapiro_p_value":0.000488593999762088,"phenotype_category":"","phenotype_scoring":"Diameter of rosette (end point, after flowering)","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5952","phenotype_name":"RBN","phenotype_description":"","variation_type":"continuous","number_samples":674,"shapiro_test_statistic":0.968874037265778,"shapiro_p_value":8.97754856565847e-11,"phenotype_category":"","phenotype_scoring":"Rosette branch number","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5953","phenotype_name":"CBN","phenotype_description":"","variation_type":"continuous","number_samples":677,"shapiro_test_statistic":0.919513642787933,"shapiro_p_value":1.61044941171049e-18,"phenotype_category":"","phenotype_scoring":"Cauline leaf number","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P5954","phenotype_name":"Length","phenotype_description":"","variation_type":"continuous","number_samples":680,"shapiro_test_statistic":0.958580017089844,"shapiro_p_value":6.41596259627619e-13,"phenotype_category":"","phenotype_scoring":"Length of main flowering stem","phenotype_source":""},{"species_id":108,"species_name":"Brachypodium distachyon","dataset_id":218,"dataset_name":"Subspecies A","phenotype_id":"Bd108P74","phenotype_name":"Huan 09Oct 2050","phenotype_description":null,"variation_type":"continuous","number_samples":63,"shapiro_test_statistic":0.964802443981171,"shapiro_p_value":0.0684992522001266,"phenotype_category":null,"phenotype_scoring":null,"phenotype_source":"None"},{"species_id":108,"species_name":"Brachypodium distachyon","dataset_id":218,"dataset_name":"Subspecies A","phenotype_id":"Bd108P21","phenotype_name":"Huan 13Nov 2015","phenotype_description":null,"variation_type":"continuous","number_samples":63,"shapiro_test_statistic":0.969777703285217,"shapiro_p_value":0.123503521084785,"phenotype_category":null,"phenotype_scoring":null,"phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6696","phenotype_name":"Perimeter Day 21","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.984534978866577,"shapiro_p_value":0.000516236177645624,"phenotype_category":"","phenotype_scoring":"Images of each tray were taken at day 21. From these images the following measurements were extracted using a custom ImageJ macro: perimeter day 21.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6698","phenotype_name":"Rosette Dry Mass","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.994929552078247,"shapiro_p_value":0.262051492929459,"phenotype_category":"","phenotype_scoring":"Once the plants had produced about 10 siliques, they were harvested, and rosette diameters were measured. The rosettes were placed into paper bags, dried at 80 °C for 24 hours, and weighed. ","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6693","phenotype_name":"Area Growth","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.990634262561798,"shapiro_p_value":0.0182104501873255,"phenotype_category":"","phenotype_scoring":"Images of each tray were taken at days 21 and 29. From these images the following measurements were extracted using a custom ImageJ macro: area growth [(day 29 − day 21)/8 d].","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6699","phenotype_name":"Rosette Diameter","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.994081079959869,"shapiro_p_value":0.157705530524254,"phenotype_category":"","phenotype_scoring":"Once the plants had produced about 10 siliques, they were harvested, and rosette diameters were measured. The rosettes were placed into paper bags, dried at 80 °C for 24 hours, and weighed. ","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6700","phenotype_name":"LTF","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.969268500804901,"shapiro_p_value":4.55375669616842e-07,"phenotype_category":"","phenotype_scoring":"Plants were subsequently phenotyped for rosette leaf count at the first open flower (LTF).","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6695","phenotype_name":"Area Day 29","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.990881383419037,"shapiro_p_value":0.0212398171424866,"phenotype_category":"","phenotype_scoring":"Images of each tray were taken at day 29. From these images the following measurements were extracted using a custom ImageJ macro: area day 29.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6697","phenotype_name":"Area Day 21","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.992382109165192,"shapiro_p_value":0.0545381307601929,"phenotype_category":"","phenotype_scoring":"Images of each tray were taken at day 21. From these images the following measurements were extracted using a custom ImageJ macro: area day 21.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6708","phenotype_name":"Perimeter Day 21 (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.983324408531189,"shapiro_p_value":0.000269836658844724,"phenotype_category":"","phenotype_scoring":"MPH for perimeter day 21 was calculated as the distance of the hybrid phenotype from the midparent value, or mean of the two parental genotypes.","phenotype_source":"None"},{"species_id":5,"species_name":"Pristionchus pacificus","dataset_id":26,"dataset_name":"Htt_223_strains_unix","phenotype_id":"PP5P88","phenotype_name":"Htt 212 allclades","phenotype_description":"","variation_type":"binary","number_samples":211,"shapiro_test_statistic":0.47772878408432,"shapiro_p_value":1.55154799725247e-24,"phenotype_category":"","phenotype_scoring":"Scored at Htt (1) Ltt (0) meaning High Temperature tolerant (able to give rise to fertile offspring at 30 degrees) and Ltt Low Temperature tolerant (not able to give rise to fertile offspring at 30 degrees).","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6706","phenotype_name":"DTF (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.986503541469574,"shapiro_p_value":0.00154494971502572,"phenotype_category":"","phenotype_scoring":"MPH for days to first open flower (DTF) was calculated as the distance of the hybrid phenotype from the midparent value, or mean of the two parental genotypes.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6704","phenotype_name":"Area Growth (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.982198774814606,"shapiro_p_value":0.000150085659697652,"phenotype_category":"","phenotype_scoring":"MPH of area growth was calculated as the distance of the hybrid phenotype from the midparent value, or mean of the two parental genotypes.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6705","phenotype_name":"Rosette Dry Mass (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.99501234292984,"shapiro_p_value":0.274928271770477,"phenotype_category":"","phenotype_scoring":"MPH for rosette dry mass was calculated as the distance of the hybrid phenotype from the midparent value, or mean of the two parental genotypes.","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6692","phenotype_name":"Perimeter Growth","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). Humidity domes were removed after 1 week, and pots were manually thinned to one plant per pot.","variation_type":"continuous","number_samples":372,"shapiro_test_statistic":0.986478686332703,"shapiro_p_value":0.00152326608076692,"phenotype_category":"","phenotype_scoring":"Images of each tray were taken at days 21 and 29. From these images the following measurements were extracted using a custom ImageJ macro: perimeter growth [(day 29 − day 21)/8 d].","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":42,"dataset_name":"F1-Hybrids (Seymour et. al. 2016, PNAS) ","phenotype_id":"AT1P6703","phenotype_name":"Area Day 29 (MPH)","phenotype_description":"In total, five replicates of 495 genotypes were surveyed in this experiment (435 hybrid genotypes, 30 parental genotypes from manual crosses, and 30 self-fertilized parental genotypes). Five unsterilized seeds for each replicate were aliquoted into 1.5-mL tubes with 500 μL of ddH20. Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. 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Seeds were stratified in the dark at 4 °C for 10 days. After stratification, seeds were sown into soil (CL T Topferde; www.einheitserde.de) pots in a completely randomized design. Flats were covered with humidity domes and placed into 16 °C growth chambers under long-day conditions (16 hours light: 8 hours dark) at a relative humidity of 65%. Light bulbs were a mixture of Sylvania Cool White Deluxe to Warm White Deluxe fluorescent bulbs (4:2) (www.havells-sylvania.com/en-GB/sylvania). 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For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.988048195838928,"shapiro_p_value":0.0186641570180655,"phenotype_category":"Leaf traits","phenotype_scoring":"Length measured at ½ of the leaf’s width (mm)","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P63","phenotype_name":"Leaf perimeter","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.990250825881958,"shapiro_p_value":0.0542262308299541,"phenotype_category":"Leaf traits","phenotype_scoring":"Perimeter of an individual leaf (mm)","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P61","phenotype_name":"RGB proportion blue","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\n\r\nRatio between values of B and R+G+B.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.954824090003967,"shapiro_p_value":1.01999951596099e-07,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of blue in average leaf colour","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P48","phenotype_name":"Leaf ellipsoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.\r\n\r\nSmaller values indicate that the leaf is more ellipsoid","variation_type":"continuous","number_samples":286,"shapiro_test_statistic":0.991717040538788,"shapiro_p_value":0.109157539904118,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the error resulting from a best-fit ellipse to the area of the leaf. Error is the average magnitude of residuals (Res) along the leaf’s perimeter, divided by the length of the major (longer) axis of the ellipse","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P34","phenotype_name":"Leaf total N","phenotype_description":"Leaf tissue was dried in an oven for 3 days at 65ºC and then ground in individual 2 ml tubes containing one 0.3 cm metal bead using a TissueLyser (Qiagen, Hilden, Germany). Three to five mg of ground tissue were packed in tin cups and sent for inorganic element analysis to the Pacific Centre for Isotopic and Geochemical Research of the University of British Columbia","variation_type":"continuous","number_samples":290,"shapiro_test_statistic":0.922211289405823,"shapiro_p_value":3.76676571878232e-11,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Amount of nitrogen in leaf tissue (proportion of total weight)","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P60","phenotype_name":"RGB proportion red","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\n\r\nRatio between values of R and R+G+B.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.998427093029022,"shapiro_p_value":0.996166169643402,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of red in average leaf colour","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P51","phenotype_name":"Leaf obovoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.\r\n\r\nCalculated as: Obovoid = 1/2 * scale_ob(y) * (1 – w1/W + w2/W) If Obovoid > 0, subtract 0.4. Otherwise, Obovoid is 0","variation_type":"continuous","number_samples":286,"shapiro_test_statistic":0.917869687080383,"shapiro_p_value":2.00550756557227e-11,"phenotype_category":"Leaf traits","phenotype_scoring":"Obovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ob","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P64","phenotype_name":"Leaf area","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.961488664150238,"shapiro_p_value":7.10915173840476e-07,"phenotype_category":"Leaf traits","phenotype_scoring":"Area of an individual leaf(mm2)","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P68","phenotype_name":"Leaf maximum height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.98872435092926,"shapiro_p_value":0.0258398819714785,"phenotype_category":"Leaf traits","phenotype_scoring":"Maximum length of the leaf (mm)","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P52","phenotype_name":"Leaf width widest pos","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":286,"shapiro_test_statistic":0.780783712863922,"shapiro_p_value":2.72106413323906e-19,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P44","phenotype_name":"Leaf curvedHeight maxWidth","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":286,"shapiro_test_statistic":0.981909275054932,"shapiro_p_value":0.00110471155494452,"phenotype_category":"Leaf traits","phenotype_scoring":"Ratio between curved length and maximum leaf width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P6","phenotype_name":"Peduncle length of first flower","phenotype_description":"Length of the peduncle was measured in the field after anthesis","variation_type":"continuous","number_samples":62,"shapiro_test_statistic":0.982974767684937,"shapiro_p_value":0.544001698493958,"phenotype_category":"Plant architecture","phenotype_scoring":"Length of the peduncle of the first flower (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P207","phenotype_name":"Disk to phyllaries diameter ratio","phenotype_description":"","variation_type":"continuous","number_samples":574,"shapiro_test_statistic":0.990960419178009,"shapiro_p_value":0.00138969940599054,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between flower disk and phyllaries whorl diameters","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P6","phenotype_name":"Internode length","phenotype_description":"Ratio between plant height and number of nodes (approximated as total leaf number)","variation_type":"continuous","number_samples":581,"shapiro_test_statistic":0.997281610965729,"shapiro_p_value":0.455619931221008,"phenotype_category":"Plant architecture","phenotype_scoring":"Average length of an internode (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P199","phenotype_name":"RGB proportion green","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\n\r\nRatio between values of G and R+G+B.","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.867715239524841,"shapiro_p_value":4.8800177579581e-22,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of green in average leaf colour","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P183","phenotype_name":"Trichomes density nonvein average","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.962664365768433,"shapiro_p_value":3.64229930938098e-11,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes outside secondary veins (trichome/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P133","phenotype_name":"Stem colour","phenotype_description":"Pigmentation intensity was determined after anthesis using an ordinal scale from 0 = no purple colouration; to 4 = intense purple colouration","variation_type":"categorical","number_samples":614,"shapiro_test_statistic":0.898431241512299,"shapiro_p_value":9.73107938810511e-20,"phenotype_category":"Pigmentation","phenotype_scoring":"Presence and intensity of purple colour on main stem (0-4)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P188","phenotype_name":"Leaf ellipsoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.99451756477356,"shapiro_p_value":0.0301637165248394,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the error resulting from a best-fit ellipse to the area of the leaf. Error is the average magnitude of residuals (Res) along the leaf’s perimeter, divided by the length of the major (longer) axis of the ellipse. Smaller values indicate that t","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P138","phenotype_name":"Leaf width mid-height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.997099876403809,"shapiro_p_value":0.368691951036453,"phenotype_category":"Leaf traits","phenotype_scoring":"Width measured at ½ of the leaf’s length (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P176","phenotype_name":"Trichomes lengt","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. Trichome length was averaged over 10 trichomes, measured using the Fiji (Schneider et al., 2012; Schindelin et al., 2012)","variation_type":"continuous","number_samples":598,"shapiro_test_statistic":0.966985762119293,"shapiro_p_value":2.40894609815356e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"Length of non-glandular trichomes on abaxial side of leaves (nm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P181","phenotype_name":"Trichomes density edge average","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.898406505584717,"shapiro_p_value":1.94809396535243e-19,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes near the leaf edge (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P11","phenotype_name":"SLA","phenotype_description":"The same full leaf that was used for morphometrics was dried in an oven for 3 days at 65ºC and weighed on a precision scale. SLA was calculated as the ratio between Leaf Area and leaf dry weight","variation_type":"continuous","number_samples":593,"shapiro_test_statistic":0.908985197544098,"shapiro_p_value":2.34848632061233e-18,"phenotype_category":"Leaf traits","phenotype_scoring":"Specific Leaf Area (mm2/mg)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P111","phenotype_name":"Seed ellipsoid","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.\r\n\r\nSmaller values indicate that the seed is more ellipsoid","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.995892345905304,"shapiro_p_value":0.334293365478516,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the error resulting from a best-fit ellipse to the area of the seed. Error is the average magnitude of residuals (Res) along the seed’s perimeter, divided by the length of the major (longer) axis of the ellipse.","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P141","phenotype_name":"Leaf maximum height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.990053236484528,"shapiro_p_value":0.0004470074782148,"phenotype_category":"Leaf traits","phenotype_scoring":"Maximum lenght of the leaf (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P198","phenotype_name":"Total RGB","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.985199153423309,"shapiro_p_value":9.64090850175126e-06,"phenotype_category":"Leaf traits","phenotype_scoring":"Sum of RGB values for leaf colour","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P116","phenotype_name":"Seed eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.944235622882843,"shapiro_p_value":1.44123064177437e-11,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P118","phenotype_name":"Seed distal eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in a hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.905131697654724,"shapiro_p_value":1.18304731754006e-15,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P10","phenotype_name":"Primary branches","phenotype_description":"The total number of true leaves on the main stem was determined after anthesis, and shortly before the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":584,"shapiro_test_statistic":0.79258120059967,"shapiro_p_value":1.26853478902565e-26,"phenotype_category":"Plant architecture","phenotype_scoring":"Number of branches on the main stem","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P191","phenotype_name":"Leaf obovoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary. Calculated as Obovoid = 1/2 * scale_ob(y) * (1 – w1/W + w2/W). If Obovoid > 0, subtract 0.4. Otherwise, Obovoid is 0.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.980262100696564,"shapiro_p_value":3.13777945848415e-07,"phenotype_category":"Leaf traits","phenotype_scoring":"Obovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ob","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P124","phenotype_name":"Flower head diameter","phenotype_description":"Average of two perpedicular inflorescence diameter measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":572,"shapiro_test_statistic":0.996448874473572,"shapiro_p_value":0.234681442379951,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Diameter of the inflorescence (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P108","phenotype_name":"Seed shape index external I","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.984643459320068,"shapiro_p_value":0.000175124296220019,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the Maximum Height to Maximum Width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P100","phenotype_name":"Seed perimeter","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.996315360069275,"shapiro_p_value":0.433001130819321,"phenotype_category":"Seed traits","phenotype_scoring":"Perimeter of an individual seed (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P115","phenotype_name":"Seed width widest pos","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.995865404605865,"shapiro_p_value":0.328639388084412,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P121","phenotype_name":"Disk diameter","phenotype_description":"Average of two perpedicular inflorescence disk diameter measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":576,"shapiro_test_statistic":0.994787871837616,"shapiro_p_value":0.047735583037138,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Diameter of the inflorescence disk (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P134","phenotype_name":"Petiole main veins colour","phenotype_description":"Pigmentation intensity was determined after anthesis using an ordinal scale from 0 = no purple colouration; to 4 = intense purple colouration","variation_type":"categorical","number_samples":614,"shapiro_test_statistic":0.847740888595581,"shapiro_p_value":7.74688624628264e-24,"phenotype_category":"Pigmentation","phenotype_scoring":"Presence and intensity of purple colour on main leaf veins (0-4)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P178","phenotype_name":"Trichomes density leaf edge secondary veins","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.842738687992096,"shapiro_p_value":7.74241182722822e-24,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes on secondary veins near the leaf edge (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P114","phenotype_name":"Seed ovoid","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.\r\n\r\nCalculated as: Ovoid = 1/2 * scale_ov(y) * (1 – w2/W + w1/W). If Ovoid > 0, subtract 0.4. Otherwise, Ovoid is 0","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.996366500854492,"shapiro_p_value":0.446157783269882,"phenotype_category":"Seed traits","phenotype_scoring":"Ovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ov.","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P182","phenotype_name":"Trichomes density center average","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.983781218528748,"shapiro_p_value":3.48360072166543e-06,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes near the leaf main vein (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P135","phenotype_name":"Darker axillae","phenotype_description":"Presence/absence of purple colour on leaf axillae (1/0)","variation_type":"binary","number_samples":607,"shapiro_test_statistic":0.614270329475403,"shapiro_p_value":1.18563253042065e-34,"phenotype_category":"Pigmentation","phenotype_scoring":"Presence (1) or absence (0) of patches of purple colour at the axillae of leaves was determined after anthesis","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P186","phenotype_name":"Leaf shape index external II","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.925308108329773,"shapiro_p_value":1.1297051794587e-16,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of Height Midwidth to Width Mid-height","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P113","phenotype_name":"Seed rectangular","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.997215569019318,"shapiro_p_value":0.691390454769135,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P123","phenotype_name":"Ligue width","phenotype_description":"Averages maximum width of three ligules each from three inflorescences.","variation_type":"continuous","number_samples":563,"shapiro_test_statistic":0.998032093048096,"shapiro_p_value":0.769784927368164,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Maximum width of individual ligules (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P180","phenotype_name":"Trichomes density leaf center secondary veins","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.913052141666412,"shapiro_p_value":5.51130093501014e-18,"phenotype_category":"Leaf triats","phenotype_scoring":"Density of trichomes on secondary veins near the leaf main vein (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P140","phenotype_name":"Leaf height mid-width","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.989647507667542,"shapiro_p_value":0.000314500037347898,"phenotype_category":"Leaf traits","phenotype_scoring":"Length measured at ½ of the leaf’s width (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P12","phenotype_name":"SLA","phenotype_description":"The same full leaf that was used for morphometrics was dried in an oven for 3 days at 65ºC and weighed on a precision scale. SLA was calculated as the ratio between Leaf Area and leaf dry weight","variation_type":"continuous","number_samples":202,"shapiro_test_statistic":0.953857362270355,"shapiro_p_value":4.08039386456949e-06,"phenotype_category":"Leaf traits","phenotype_scoring":"Specific Leaf Area (mm2/mg)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P187","phenotype_name":"Leaf curved shape index","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.93916392326355,"shapiro_p_value":6.27975361666114e-15,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of Curved Height to the width of the leaf at mid-curved-height, as measured perpendicular to the curved height line","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P196","phenotype_name":"Leaf shape index internal","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.967580616474152,"shapiro_p_value":3.1054531168806e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the internal ellipse’s height to its width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P119","phenotype_name":"Seed shape index internal","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.976313233375549,"shapiro_p_value":2.02124124371039e-06,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the internal ellipse’s height to its width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P190","phenotype_name":"Leaf rectangular","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.997040510177612,"shapiro_p_value":0.350332379341125,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the rectangle bounding the leaf to the area of the rectangle bounded by the leaf","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P120","phenotype_name":"Seed eccentricity area index","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.967487454414368,"shapiro_p_value":4.0480436780399e-08,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the area of the seed outside the ellipse to the total area of the seed","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P203","phenotype_name":"Phyllaries length","phenotype_description":"Average length of three phyllaries each from three inflorescences.","variation_type":"continuous","number_samples":574,"shapiro_test_statistic":0.959644496440887,"shapiro_p_value":1.92462122627912e-11,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Length of individual phyllaries (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P202","phenotype_name":"Phyllaries diameter","phenotype_description":"Average of two perpendicular phyllaries whorl diameter measurements performed on the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":575,"shapiro_test_statistic":0.980512857437134,"shapiro_p_value":6.07394781582116e-07,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Diameter of phyllaries whorl (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P4","phenotype_name":"Stem diamater at flowering","phenotype_description":"Primary stem diameter was measured after the first node with a digital caliper, on the day in which the first inflorescence started producing pollen.","variation_type":"continuous","number_samples":588,"shapiro_test_statistic":0.975075602531433,"shapiro_p_value":1.86914839162e-08,"phenotype_category":"Plant architecture","phenotype_scoring":"Primary stem diameter at anthesis (mm0","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P0","phenotype_name":"TLN","phenotype_description":"The total number of true leaves on the main stem was determined after anthesis","variation_type":"continuous","number_samples":605,"shapiro_test_statistic":0.776224136352539,"shapiro_p_value":6.22325839226345e-28,"phenotype_category":"Plant development","phenotype_scoring":"Total Leaf Number; number of true leaves on the main stem","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P8","phenotype_name":"Stem diameter final before 1st node","phenotype_description":"Primary stem diameter was measured before the first node with a digital caliper, on the day in which the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":159,"shapiro_test_statistic":0.982027649879456,"shapiro_p_value":0.0366221591830254,"phenotype_category":"Plant architecture","phenotype_scoring":"Diameter of the stem base of fully developed plants (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P126","phenotype_name":"Flower FHDD ratio","phenotype_description":"","variation_type":"continuous","number_samples":573,"shapiro_test_statistic":0.99295711517334,"shapiro_p_value":0.00857568997889757,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between Inflorescence and disk diameters","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P127","phenotype_name":"Ligules number","phenotype_description":"Ligules were counted from pictures of the first three inflorescences for each individual.","variation_type":"continuous","number_samples":580,"shapiro_test_statistic":0.96102386713028,"shapiro_p_value":2.85014980366816e-11,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Average number of ligule per Inflorescence","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P193","phenotype_name":"Leaf eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.882181704044342,"shapiro_p_value":6.27906704147573e-21,"phenotype_category":"Leaf taits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height.","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P122","phenotype_name":"Ligule length","phenotype_description":"Average of three ligules length measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":570,"shapiro_test_statistic":0.99809992313385,"shapiro_p_value":0.787080585956573,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Length of individual ligules (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P143","phenotype_name":"Leaf curvedHeight maxWidth","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.913380920886993,"shapiro_p_value":5.33651394926492e-18,"phenotype_category":"Leaf traits","phenotype_scoring":"Ratio between curved length and maximum leaf width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P14","phenotype_name":"Leaf C N ratio","phenotype_description":"","variation_type":"continuous","number_samples":606,"shapiro_test_statistic":0.7972412109375,"shapiro_p_value":7.97467192807698e-27,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Ratio between carbon and nitrogen content in leaf tissue","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P5","phenotype_name":"Plant height at flowering","phenotype_description":"Length of the main stem after flowering and after elongation was complete","variation_type":"continuous","number_samples":585,"shapiro_test_statistic":0.936310052871704,"shapiro_p_value":4.19953937754293e-15,"phenotype_category":"Plant architecture","phenotype_scoring":"Total length of the main stem (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P101","phenotype_name":"Seed area","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.991458177566528,"shapiro_p_value":0.0148074859753251,"phenotype_category":"Seed traits","phenotype_scoring":"Area of an individual seed (mm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P1","phenotype_name":"LIR","phenotype_description":"Ratio between TLN and Days to budding","variation_type":"continuous","number_samples":604,"shapiro_test_statistic":0.860312044620514,"shapiro_p_value":9.56933274659121e-23,"phenotype_category":"Plant development","phenotype_scoring":"Leaf Initiation Rate; speed at which new leaves are generated (leaves/day)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P112","phenotype_name":"Seed circular","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.997512102127075,"shapiro_p_value":0.778898239135742,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the error resulting from a best-fit circle to the area of the seed. Error is the average magnitude of residuals (Res) along the seed’s perimeter, divided by the radius of the circle. Smaller values indicate that the seed is more circular.","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P104","phenotype_name":"Seed height mid width","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.995143711566925,"shapiro_p_value":0.2039455473423,"phenotype_category":"Seed traits","phenotype_scoring":"Length measured at ½ of the seed’s width (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P102","phenotype_name":"Seed width mid height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.997465670108795,"shapiro_p_value":0.765572130680084,"phenotype_category":"Seed traits","phenotype_scoring":"Width measured at ½ of the seed’s length (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P125","phenotype_name":"Ligule LW ratio","phenotype_description":"","variation_type":"continuous","number_samples":570,"shapiro_test_statistic":0.981048703193665,"shapiro_p_value":9.45026158660767e-07,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between ligule length and maximum width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P117","phenotype_name":"Seed proximal eccentriciy","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.803804934024811,"shapiro_p_value":2.35296508317275e-22,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P206","phenotype_name":"Flowerhead to phyllaries diameter rati","phenotype_description":"","variation_type":"continuous","number_samples":571,"shapiro_test_statistic":0.995960354804993,"shapiro_p_value":0.151199147105217,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between flower head and phyllaries whorl diameters","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P7","phenotype_name":"Stem diameter final before 1st node","phenotype_description":"Primary stem diameter was measured before the first node with a digital caliper, on the day in which the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":593,"shapiro_test_statistic":0.971675455570221,"shapiro_p_value":2.71982059096842e-09,"phenotype_category":"Plant architecture","phenotype_scoring":"Diameter of the stem base of fully developed plants (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P200","phenotype_name":"RGB proportion red","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\n\r\nRatio between values of R and R+G+B.","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.949154555797577,"shapiro_p_value":1.89425840464719e-13,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of red in average leaf colour","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P139","phenotype_name":"Leaf maximum width","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.992567360401154,"shapiro_p_value":0.00444997195154428,"phenotype_category":"Leaf traits","phenotype_scoring":"Maximum width of the leaf (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P3","phenotype_name":"DTF (days to flower)","phenotype_description":"Age of the plant at budding","variation_type":"continuous","number_samples":586,"shapiro_test_statistic":0.842282772064209,"shapiro_p_value":1.12955651955058e-23,"phenotype_category":"Plant developmennt","phenotype_scoring":"Number of days passed between the transplant date and the date at which the first flower bud became visible","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P142","phenotype_name":"Leaf curved height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.988197565078735,"shapiro_p_value":9.3327573267743e-05,"phenotype_category":"Leaf traits","phenotype_scoring":"Length measured along a curved line through the leaf (equidistant from both leaf borders; mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P205","phenotype_name":"Phyllaries LW ratio","phenotype_description":"","variation_type":"continuous","number_samples":574,"shapiro_test_statistic":0.949329257011414,"shapiro_p_value":4.02473329186651e-13,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between phyllaries length and maximum width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P177","phenotype_name":"Trichomes density leaf edge flat area","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.908658444881439,"shapiro_p_value":1.9415903870332e-18,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes outside secondary veins near the leaf edge (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P13","phenotype_name":"Leaf total C","phenotype_description":"Leaf tissue was dried in an oven for 3 days at 65ºC and then ground in individual 2 ml tubes containing one 0.3 cm metal bead using a TissueLyser (Qiagen, Hilden, Germany). Three to five mg of ground tissue were packed in tin cups and sent for inorganic element analysis to the Pacific Centre for Isotopic and Geochemical Research of the University of British Columbia","variation_type":"continuous","number_samples":606,"shapiro_test_statistic":0.761205077171326,"shapiro_p_value":1.03772788744603e-28,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Amount of carbon in leaf tissue (proportion of total weight)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P197","phenotype_name":"Leaf eccentricity area inde","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.964629590511322,"shapiro_p_value":7.97032648214291e-11,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the leaf outside the ellipse to the total area of the leaf","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P204","phenotype_name":"Phyllaries width","phenotype_description":"Averages maximum width of three phyllaries each from three inflorescences.","variation_type":"continuous","number_samples":574,"shapiro_test_statistic":0.984183430671692,"shapiro_p_value":6.98731992088142e-06,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Maximum width of individual phyllaries (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P184","phenotype_name":"Trichomes density vein average","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.907143950462341,"shapiro_p_value":1.36661559228394e-18,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes on secondary veins (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P189","phenotype_name":"Leaf circular","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.956109523773193,"shapiro_p_value":2.27298757073113e-12,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the error resulting from a best-fit circle to the area of the leaf. Error is the average magnitude of residuals (Res) along the leaf’s perimeter, divided by the radius of the circle. Smaller values indicate that the leaf is more circular","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P179","phenotype_name":"Trichomes density leaf center flat are","phenotype_description":"A high resolution scan (2400 dpi) was taken for a 1.2 cm wide section of the abaxial side perpendicular to the leaf main vein, of the same leaf used for morphometric measurements. The number of non-glandular trichomes was determined in 1 cm2 region near the edge of the leaf and near the main vein. Trichomes on leaf surface or on secondary veins were counted separately using Fiji (Schneider et al., 2012; Schindelin et al., 2012). ","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.992014765739441,"shapiro_p_value":0.00273452117107809,"phenotype_category":"Leaf traits","phenotype_scoring":"Density of trichomes outside secondary veins near the leaf main vein (trichomes/cm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P2","phenotype_name":"Days to budding","phenotype_description":"Age of the plant at anthesis","variation_type":"continuous","number_samples":612,"shapiro_test_statistic":0.796404719352722,"shapiro_p_value":5.39964157748704e-27,"phenotype_category":"Plant Development","phenotype_scoring":"Number of days passed between the transplant date and the date at which pollen was first produced in the first flower head","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P137","phenotype_name":"Leaf area","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.986161768436432,"shapiro_p_value":1.87767327588517e-05,"phenotype_category":"Leaf traits","phenotype_scoring":"Area of an individual leaf (mm2)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P8","phenotype_name":"Stem diameter final after 5th node","phenotype_description":"Primary stem diameter was measured after the fifth node with a digital caliper, on the day in which the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":583,"shapiro_test_statistic":0.986524045467377,"shapiro_p_value":3.25314249494113e-05,"phenotype_category":"Plant architecture","phenotype_scoring":"Diameter of the stem of fully developed plants (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P136","phenotype_name":"Leaf perimeter","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.985515534877777,"shapiro_p_value":1.15484826892498e-05,"phenotype_category":"Leaf traits","phenotype_scoring":"Perimeter of an individual leaf (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P5","phenotype_name":"Plant height at flowering","phenotype_description":"Length of the main stem after flowering and after elongation was complete","variation_type":"continuous","number_samples":162,"shapiro_test_statistic":0.955696284770966,"shapiro_p_value":5.15287829330191e-05,"phenotype_category":"Plant architecture","phenotype_scoring":"Total length of the main stem (cm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P12","phenotype_name":"Leaf total N","phenotype_description":"Leaf tissue was dried in an oven for 3 days at 65ºC and then ground in individual 2 ml tubes containing one 0.3 cm metal bead using a TissueLyser (Qiagen, Hilden, Germany). Three to five mg of ground tissue were packed in tin cups and sent for inorganic element analysis to the Pacific Centre for Isotopic and Geochemical Research of the University of British Columbia","variation_type":"continuous","number_samples":606,"shapiro_test_statistic":0.929182231426239,"shapiro_p_value":2.57333426875744e-16,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Amount of nitrogen in leaf tissue (proportion of total weight)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P192","phenotype_name":"Leaf width widest pos","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.988967180252075,"shapiro_p_value":0.000176444227690808,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height.","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P201","phenotype_name":"RGB proportion blue","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\n\r\nRatio between values of B and R+G+B.","variation_type":"continuous","number_samples":596,"shapiro_test_statistic":0.917869210243225,"shapiro_p_value":1.80919223041924e-17,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of blue in average leaf colour","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P68","phenotype_name":"Seed distal eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.954171597957611,"shapiro_p_value":6.98142976034433e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P69","phenotype_name":"Seed shape index internal","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.963846683502197,"shapiro_p_value":0.000535763858351856,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the internal ellipse’s height to its width","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P70","phenotype_name":"Seed eccentricity area index","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.980046093463898,"shapiro_p_value":0.0272299144417048,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the area of the seed outside the ellipse to the total area of the seed","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P63","phenotype_name":"Seed rectangular","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.995103657245636,"shapiro_p_value":0.863288998603821,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P67","phenotype_name":"Seed proximal eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.888797879219055,"shapiro_p_value":2.95745827827432e-09,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P65","phenotype_name":"Seed width widest pos","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.989577531814575,"shapiro_p_value":0.32625287771225,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P66","phenotype_name":"Seed eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.965573668479919,"shapiro_p_value":0.000788741512224078,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P2","phenotype_name":"Days to budding","phenotype_description":"Number of days passed between the transplant date and the date at which pollen was first produced in the first flower head","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.873407661914825,"shapiro_p_value":1.93868754383431e-10,"phenotype_category":"Plant development","phenotype_scoring":"Age of the plant at anthesis (days)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P52","phenotype_name":"Seed width mid height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.985297799110413,"shapiro_p_value":0.0792960524559021,"phenotype_category":"Seed traits","phenotype_scoring":"Width measured at ½ of the seed’s length (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P62","phenotype_name":"Seed circular","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.991105556488037,"shapiro_p_value":0.39557808637619,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the error resulting from a best-fit circle to the area of the seed. Error is the average magnitude of residuals (Res) along the seed’s perimeter, divided by the radius of the circle. Smaller values indicate that the seed is more circular","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P61","phenotype_name":"Seed ellipsoid","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.989352583885193,"shapiro_p_value":0.249948084354401,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the error resulting from a best-fit ellipse to the area of the seed. Error is the average magnitude of residuals (Res) along the seed’s perimeter, divided by the length of the major (longer) axis of the ellipse. Smaller values indicate that t","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P53","phenotype_name":"Seed maximum width","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.992068886756897,"shapiro_p_value":0.498548954725266,"phenotype_category":"Seed traits","phenotype_scoring":"Maximum width of the seed","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P59","phenotype_name":"Seed shape index external II","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.948546469211578,"shapiro_p_value":2.33670816669473e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of Height Midwidth to Width Mid-height","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P60","phenotype_name":"Seed curved shape index","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.947210788726807,"shapiro_p_value":7.72314069763524e-06,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P55","phenotype_name":"Seed maximum height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.853688359260559,"shapiro_p_value":1.51792727692834e-11,"phenotype_category":"Seed traits","phenotype_scoring":"Maximum length of the seed(mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P57","phenotype_name":"Seed HW ratio","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.958710432052612,"shapiro_p_value":8.41292858240195e-05,"phenotype_category":"Seed traits","phenotype_scoring":"Ratio between curved length and maximum seed width","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P56","phenotype_name":"Seed curved height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.858284950256348,"shapiro_p_value":2.48058708990362e-11,"phenotype_category":"Seed traits","phenotype_scoring":"Length measured along a curved line through the seed (equidistant from both seed borders; mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P43","phenotype_name":"Leaf distal eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.648941040039062,"shapiro_p_value":2.99862827131989e-20,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the leaf","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P9","phenotype_name":"Stem diameter final after 5th node","phenotype_description":"Primary stem diameter was measured after the fifth node with a digital caliper, on the day in which the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":157,"shapiro_test_statistic":0.99166476726532,"shapiro_p_value":0.492270261049271,"phenotype_category":"Plant architecture","phenotype_scoring":"Diameter of the stem of fully developed plants (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P44","phenotype_name":"Leaf shape index internal","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.960624039173126,"shapiro_p_value":2.00594877242111e-05,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the internal ellipse’s height to its width","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P49","phenotype_name":"RGB proportion blue","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\nRatio between values of B and R+G+B.","variation_type":"continuous","number_samples":200,"shapiro_test_statistic":0.994286477565765,"shapiro_p_value":0.643375992774963,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of blue in average leaf colour","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P47","phenotype_name":"RGB proportion green","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\nRatio between values of G and R+G+B.","variation_type":"continuous","number_samples":200,"shapiro_test_statistic":0.99255508184433,"shapiro_p_value":0.404576361179352,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of green in average leaf colour","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P51","phenotype_name":"Seed area","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.868435740470886,"shapiro_p_value":7.62938462406382e-11,"phenotype_category":"Seed traits","phenotype_scoring":"Area of an individual seed (mm2)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P50","phenotype_name":"Seed perimeter","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.880706191062927,"shapiro_p_value":3.21112025858383e-10,"phenotype_category":"Seed traits","phenotype_scoring":"Perimeter of an individual seed (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P42","phenotype_name":"Leaf proximal eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.840797901153564,"shapiro_p_value":1.20752732357503e-13,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the leaf","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P46","phenotype_name":"Total RGB","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":200,"shapiro_test_statistic":0.984769523143768,"shapiro_p_value":0.0294867698103189,"phenotype_category":"Leaf traits","phenotype_scoring":"Sum of RGB values for leaf colour","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P32","phenotype_name":"Leaf curvedHeight maxWidth","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.908909022808075,"shapiro_p_value":7.80295050795132e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"Ratio between curved length and maximum leaf width","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P38","phenotype_name":"Leaf rectangular","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.982724606990814,"shapiro_p_value":0.0135608883574605,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the rectangle bounding the leaf to the area of the rectangle bounded by the leaf","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P37","phenotype_name":"Leaf circular","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.991403162479401,"shapiro_p_value":0.273316323757172,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the error resulting from a best-fit circle to the area of the leaf. Error is the average magnitude of residuals (Res) along the leaf’s perimeter, divided by the radius of the circle. Smaller values indicate that the leaf is more circular","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P39","phenotype_name":"Leaf obovoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.\r\n\r\nCalculated as: Obovoid = 1/2 * scale_ob(y) * (1 – w1/W + w2/W) If Obovoid > 0, subtract 0.4. Otherwise, Obovoid is 0","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.987713217735291,"shapiro_p_value":0.077059842646122,"phenotype_category":"Leaf traits","phenotype_scoring":"Obovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ob","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P40","phenotype_name":"Leaf width widest pos","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.992512762546539,"shapiro_p_value":0.387974321842194,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P3","phenotype_name":"DTF","phenotype_description":"Number of days passed between the transplant date and the date at which the first flower bud became visible","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.931325078010559,"shapiro_p_value":5.65777952488133e-07,"phenotype_category":"Plant development","phenotype_scoring":"Days to flower; age of the plant at budding (days)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P41","phenotype_name":"Leaf Eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.853330373764038,"shapiro_p_value":4.84813198701334e-13,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P36","phenotype_name":"Leaf ellipsoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.994886577129364,"shapiro_p_value":0.723554193973541,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the error resulting from a best-fit ellipse to the area of the leaf. Error is the average magnitude of residuals (Res) along the leaf’s perimeter, divided by the length of the major (longer) axis of the ellipse. Smaller values indicate that t","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. 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Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.993678748607635,"shapiro_p_value":0.541885197162628,"phenotype_category":"Leaf traits","phenotype_scoring":"Width measured at ½ of the leaf’s length (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P30","phenotype_name":"Leaf maximum height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. 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Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.985184013843536,"shapiro_p_value":0.03171731159091,"phenotype_category":"Leaf traits","phenotype_scoring":"Maximum width of the leaf (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P31","phenotype_name":"Leaf curved height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. 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For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.993144273757935,"shapiro_p_value":0.467441290616989,"phenotype_category":"Leaf traits","phenotype_scoring":"Area of an individual leaf (mm2)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. 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SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P1","phenotype_name":"LIR","phenotype_description":"Ratio between TLN and Days_to_budding","variation_type":"continuous","number_samples":159,"shapiro_test_statistic":0.924209833145142,"shapiro_p_value":2.05458164259653e-07,"phenotype_category":"Plant development","phenotype_scoring":"Leaf Initiation Rate; speed at which new leaves are generated (leaves/day)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P0","phenotype_name":"TLN","phenotype_description":"The total number of true leaves on the main stem was determined after anthesis","variation_type":"continuous","number_samples":160,"shapiro_test_statistic":0.96109938621521,"shapiro_p_value":0.000184991557034664,"phenotype_category":"Plant development","phenotype_scoring":"Total Leaf Number; number of true leaves on the main stem","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. 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Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":202,"shapiro_test_statistic":0.994737446308136,"shapiro_p_value":0.704369246959686,"phenotype_category":"Inflorescence diameter","phenotype_scoring":"Diameter of the inflorescence (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. 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SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P18","phenotype_name":"Ligule width","phenotype_description":"Averages maximum width of three ligules each from three inflorescences.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.988828241825104,"shapiro_p_value":0.113893605768681,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Maximum width of individual ligules (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P17","phenotype_name":"Ligule length","phenotype_description":"Average of three ligules length measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.990165650844574,"shapiro_p_value":0.180759966373444,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Length of individual ligules (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P13","phenotype_name":"Leaf total N","phenotype_description":"Leaf tissue was dried in an oven for 3 days at 65ºC and then ground in individual 2 ml tubes containing one 0.3 cm metal bead using a TissueLyser (Qiagen, Hilden, Germany). 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SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P6","phenotype_name":"Peduncle lenght of first flower","phenotype_description":"Length of the peduncle was measured in the field after anthesis","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.972998738288879,"shapiro_p_value":0.00259671569801867,"phenotype_category":"Plant architecture","phenotype_scoring":"Length of the peduncle of the first flower (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P9","phenotype_name":"Stem diameter final after 5th node","phenotype_description":"Primary stem diameter was measured after the fifth node with a digital caliper, on the day in which the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":191,"shapiro_test_statistic":0.991393804550171,"shapiro_p_value":0.314983546733856,"phenotype_category":"Plant architecture","phenotype_scoring":"Diameter of the stem of fully developed plants (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P5","phenotype_name":"Plant height at flowering","phenotype_description":"Length of the main stem after flowering and after elongation was complete","variation_type":"continuous","number_samples":200,"shapiro_test_statistic":0.977262675762177,"shapiro_p_value":0.00247426191344857,"phenotype_category":"Plant architecture","phenotype_scoring":"Total length of the main stem (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P8","phenotype_name":"Stem diameter final before 1st node","phenotype_description":"Primary stem diameter was measured before the first node with a digital caliper, on the day in which the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":193,"shapiro_test_statistic":0.982678472995758,"shapiro_p_value":0.0174599476158619,"phenotype_category":"Plant architecture","phenotype_scoring":"Diameter of the stem base of fully developed plants (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. 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SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P0","phenotype_name":"TLN","phenotype_description":"The total number of true leaves on the main stem was determined after anthesis","variation_type":"continuous","number_samples":202,"shapiro_test_statistic":0.945001542568207,"shapiro_p_value":5.72051590097544e-07,"phenotype_category":"Plant development","phenotype_scoring":"Total Leaf Number; number of true leaves on the main stem","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P4","phenotype_name":"Stem diamater at flowering","phenotype_description":"Primary stem diameter was measured after the first node with a digital caliper, on the day in which the first inflorescence started producing pollen.","variation_type":"continuous","number_samples":201,"shapiro_test_statistic":0.985776662826538,"shapiro_p_value":0.0408055633306503,"phenotype_category":"Plant architecture","phenotype_scoring":"Primary stem diameter at anthesis (mm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P7","phenotype_name":"Internode length","phenotype_description":"Ratio between plant height and number of nodes (approximated as total leaf number)","variation_type":"continuous","number_samples":154,"shapiro_test_statistic":0.967053830623627,"shapiro_p_value":0.000961648067459464,"phenotype_category":"Plant architecture","phenotype_scoring":"Average length of an internode (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P2","phenotype_name":"Days to budding","phenotype_description":"Number of days passed between the transplant date and the date at which pollen was first produced in the first flower head","variation_type":"continuous","number_samples":211,"shapiro_test_statistic":0.901169538497925,"shapiro_p_value":1.3452369773681e-10,"phenotype_category":"Plant development","phenotype_scoring":"Age of the plant at anthesis","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P3","phenotype_name":"DTF","phenotype_description":"Number of days passed between the transplant date and the date at which the first flower bud became visible","variation_type":"continuous","number_samples":196,"shapiro_test_statistic":0.983090996742249,"shapiro_p_value":0.0184731427580118,"phenotype_category":"Plant development","phenotype_scoring":"Days to flower; age of the plant at budding (days)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P36","phenotype_name":"Leaf ellipsoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.993326723575592,"shapiro_p_value":0.669081330299377,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P26","phenotype_name":"Leaf area","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.99564653635025,"shapiro_p_value":0.920625865459442,"phenotype_category":"Leaf area","phenotype_scoring":"Area of an individual leaf (mm2)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P21","phenotype_name":"Flower FHDD ratio","phenotype_description":"Average of two perpedicular inflorescence disk diameter measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":163,"shapiro_test_statistic":0.989028632640839,"shapiro_p_value":0.236208736896515,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between Inflorescence and disk diameters","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P31","phenotype_name":"Leaf curved height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.987595021724701,"shapiro_p_value":0.165189012885094,"phenotype_category":"Leaf traits","phenotype_scoring":"Length measured along a curved line through the leaf (equidistant from both leaf borders; mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P29","phenotype_name":"Leaf height mid-width","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.993770122528076,"shapiro_p_value":0.723688066005707,"phenotype_category":"Leaf traits","phenotype_scoring":"Length measured at ½ of the leaf’s width (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P28","phenotype_name":"Leaf maximum width","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.987033605575562,"shapiro_p_value":0.141395226120949,"phenotype_category":"Leaf traits","phenotype_scoring":"Maximum width of the leaf (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P30","phenotype_name":"Leaf maximum height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.99169260263443,"shapiro_p_value":0.475672572851181,"phenotype_category":"Leaf traits","phenotype_scoring":"Maximum length of the leaf (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P22","phenotype_name":"Ligules number","phenotype_description":"Ligules were counted from pictures of the first three inflorescences for each individual.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.982677221298218,"shapiro_p_value":0.0415321215987206,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Average number of ligule per Inflorescence","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P27","phenotype_name":"Leaf width mid-height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.990309953689575,"shapiro_p_value":0.340418845415115,"phenotype_category":"Leaf traits","phenotype_scoring":"Width measured at ½ of the leaf’s length (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P19","phenotype_name":"Flower head diameter","phenotype_description":"Average of two perpendicular inflorescence disk diameter measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":163,"shapiro_test_statistic":0.988084256649017,"shapiro_p_value":0.18232025206089,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Diameter of the inflorescence (cm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P18","phenotype_name":"Ligule width","phenotype_description":"Averages maximum width of three ligules each from three inflorescences.","variation_type":"continuous","number_samples":164,"shapiro_test_statistic":0.992854833602905,"shapiro_p_value":0.597154498100281,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Maximum width of individual ligules (cm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P10","phenotype_name":"Distance of first branching from ground","phenotype_description":"","variation_type":"continuous","number_samples":158,"shapiro_test_statistic":0.79610002040863,"shapiro_p_value":1.4437503113602e-13,"phenotype_category":"Plant architecture","phenotype_scoring":"Distance between ground and first node (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P16","phenotype_name":"Disk diameter","phenotype_description":"Average of two perpendicular inflorescence disk diameter measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":164,"shapiro_test_statistic":0.977634251117706,"shapiro_p_value":0.00931180268526077,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Diameter of the inflorescence disk (cm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P12","phenotype_name":"SLA","phenotype_description":"The same full leaf that was used for morphometrics was dried in an oven for 3 days at 65ºC and weighed on a precision scale. SLA was calculated as the ratio between Leaf Area and leaf dry weight","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.875996589660645,"shapiro_p_value":2.6179072798449e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"Specific Leaf Area (mm2/mg)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P17","phenotype_name":"Ligule length","phenotype_description":"Average of three ligules length measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":163,"shapiro_test_statistic":0.992510259151459,"shapiro_p_value":0.559881389141083,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Length of individual ligules (cm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P11","phenotype_name":"Primary branches","phenotype_description":"The total number of true leaves on the main stem was determined after anthesis, and shortly before the plants were removed from the field (Oct. 2016)","variation_type":"continuous","number_samples":155,"shapiro_test_statistic":0.956738770008087,"shapiro_p_value":9.42098413361236e-05,"phenotype_category":"Plant architecture","phenotype_scoring":"Number of branches on the main stem","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P13","phenotype_name":"Leaf total N","phenotype_description":"Leaf tissue was dried in an oven for 3 days at 65ºC and then ground in individual 2 ml tubes containing one 0.3 cm metal bead using a TissueLyser (Qiagen, Hilden, Germany). Three to five mg of ground tissue were packed in tin cups and sent for inorganic element analysis to the Pacific Centre for Isotopic and Geochemical Research of the University of British Columbia","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.818126976490021,"shapiro_p_value":7.03518623565436e-13,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Amount of carbon in leaf tissue (proportion of total weight)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P20","phenotype_name":"Ligule LW ratio","phenotype_description":"","variation_type":"continuous","number_samples":163,"shapiro_test_statistic":0.965398192405701,"shapiro_p_value":0.000428311672294512,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Ratio between ligule length and maximum width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P14","phenotype_name":"Leaf total C","phenotype_description":"Leaf tissue was dried in an oven for 3 days at 65ºC and then ground in individual 2 ml tubes containing one 0.3 cm metal bead using a TissueLyser (Qiagen, Hilden, Germany). Three to five mg of ground tissue were packed in tin cups and sent for inorganic element analysis to the Pacific Centre for Isotopic and Geochemical Research of the University of British Columbia","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.990891993045807,"shapiro_p_value":0.393434435129166,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Amount of nitrogen in leaf tissue (proportion of total weight)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P7","phenotype_name":"Internode length","phenotype_description":"Ratio between plant height and number of nodes (approximated as total leaf number)","variation_type":"continuous","number_samples":154,"shapiro_test_statistic":0.921229124069214,"shapiro_p_value":1.88054997352083e-07,"phenotype_category":"Plant architecture","phenotype_scoring":"Average length of an internode (cm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P4","phenotype_name":"Stem diamater at flowering","phenotype_description":"Primary stem diameter was measured after the first node with a digital caliper, on the day in which the first inflorescence started producing pollen.","variation_type":"continuous","number_samples":162,"shapiro_test_statistic":0.95257043838501,"shapiro_p_value":2.69017127720872e-05,"phenotype_category":"Plant architecture","phenotype_scoring":"Primary stem diameter at anthesis","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P15","phenotype_name":"Leaf C N ratio","phenotype_description":"","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.627208828926086,"shapiro_p_value":1.43524614732201e-18,"phenotype_category":"Carbon nitrogen content","phenotype_scoring":"Ratio between carbon and nitrogen content in leaf tissue","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P66","phenotype_name":"Seed eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.949315190315247,"shapiro_p_value":5.00639653182589e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P64","phenotype_name":"Seed ovoid","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.\r\n\r\nCalculated as: Ovoid = 1/2 * scale_ov(y) * (1 – w2/W + w1/W). If Ovoid > 0, subtract 0.4. Otherwise, Ovoid is 0","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.988564610481262,"shapiro_p_value":0.299519836902618,"phenotype_category":"Seed traits","phenotype_scoring":"Ovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ov","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P63","phenotype_name":"Seed rectangular","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.988229870796204,"shapiro_p_value":0.250488579273224,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the area of the rectangle bounding the seed to the area of the rectangle bounded by the seed","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P69","phenotype_name":"Seed shape index internal","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.967817068099976,"shapiro_p_value":0.00209197797812521,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the internal ellipse’s height to its width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P70","phenotype_name":"Seed eccentricity area index","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.99280172586441,"shapiro_p_value":0.698525309562683,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the area of the seed outside the ellipse to the total area of the seed","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P67","phenotype_name":"Seed proximal eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.9002605676651,"shapiro_p_value":2.9807214474431e-08,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the seed","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P68","phenotype_name":"Seed distal eccentricity","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.956545531749725,"shapiro_p_value":0.000198187088244595,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the seed","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P65","phenotype_name":"Seed width widest pos","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.97989559173584,"shapiro_p_value":0.035870261490345,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P53","phenotype_name":"Seed maximum width","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.992301106452942,"shapiro_p_value":0.613467156887054,"phenotype_category":"Seed traits","phenotype_scoring":"Maximum width of the seed (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P56","phenotype_name":"Seed curved height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.969879031181335,"shapiro_p_value":0.00254756934009492,"phenotype_category":"Seed traits","phenotype_scoring":"Length measured along a curved line through the seed (equidistant from both seed borders; mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P54","phenotype_name":"Seed height mid width","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.972742915153503,"shapiro_p_value":0.00501634459942579,"phenotype_category":"Seed traits","phenotype_scoring":"Length measured at ½ of the seed’s width (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P59","phenotype_name":"Seed shape index external II","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":141,"shapiro_test_statistic":0.956177294254303,"shapiro_p_value":0.000184332151548006,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of Height Midwidth to Width Mid-height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P62","phenotype_name":"Seed circular","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.983662962913513,"shapiro_p_value":0.0784649848937988,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the error resulting from a best-fit circle to the area of the seed. Error is the average magnitude of residuals (Res) along the seed’s perimeter, divided by the radius of the circle. Smaller values indicate that the seed is more circular","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P58","phenotype_name":"Seed shape index external I","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.951652765274048,"shapiro_p_value":5.38478052476421e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the Maximum Height to Maximum Width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P55","phenotype_name":"Seed maximum height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.973221182823181,"shapiro_p_value":0.00562865892425179,"phenotype_category":"Seed traits","phenotype_scoring":"Maximum length of the seed (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P61","phenotype_name":"Seed ellipsoid","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.99106365442276,"shapiro_p_value":0.48038724064827,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the error resulting from a best-fit ellipse to the area of the seed. Error is the average magnitude of residuals (Res) along the seed’s perimeter, divided by the length of the major (longer) axis of the ellipse. Smaller values indicate that t","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P45","phenotype_name":"Leaf eccentricity area index","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.941044628620148,"shapiro_p_value":3.09165443468373e-06,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the leaf outside the ellipse to the total area of the leaf","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P43","phenotype_name":"Leaf distal eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.715361475944519,"shapiro_p_value":2.69102367342691e-16,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the leaf","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P47","phenotype_name":"RGB proportion green","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\nRatio between values of G and R+G+B","variation_type":"continuous","number_samples":157,"shapiro_test_statistic":0.990827023983002,"shapiro_p_value":0.406327188014984,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of green in average leaf colour","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P46","phenotype_name":"Total RGB","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":157,"shapiro_test_statistic":0.990516781806946,"shapiro_p_value":0.377292335033417,"phenotype_category":"Leaf traits","phenotype_scoring":"Sum of RGB values for leaf colour","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P50","phenotype_name":"Seed perimeter","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.981518626213074,"shapiro_p_value":0.045060008764267,"phenotype_category":"Seed traits","phenotype_scoring":"Perimeter of an individual seed (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P51","phenotype_name":"Seed area","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.973924994468689,"shapiro_p_value":0.0066750617697835,"phenotype_category":"Seed traits","phenotype_scoring":"Area of an individual seed (mm2)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P48","phenotype_name":"RGB proportion red","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\nRatio between values of R and R+G+B.","variation_type":"continuous","number_samples":157,"shapiro_test_statistic":0.989790439605713,"shapiro_p_value":0.315503656864166,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of red in average leaf colour","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P49","phenotype_name":"RGB proportion blue","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\nRatio between values of B and R+G+B.","variation_type":"continuous","number_samples":157,"shapiro_test_statistic":0.991288006305695,"shapiro_p_value":0.452307611703873,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of blue in average leaf colour","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P52","phenotype_name":"Seed width mid height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.989854454994202,"shapiro_p_value":0.368213027715683,"phenotype_category":"Seed traits","phenotype_scoring":"Width measured at ½ of the seed’s length (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P38","phenotype_name":"Leaf rectangular","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.987164676189423,"shapiro_p_value":0.146639451384544,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the rectangle bounding the leaf to the area of the rectangle bounded by the leaf","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P41","phenotype_name":"Leaf Eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.840479850769043,"shapiro_p_value":5.80588485274425e-12,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P42","phenotype_name":"Leaf proximal eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.827183961868286,"shapiro_p_value":1.61740597044019e-12,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the leaf","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P35","phenotype_name":"Leaf curved shape index","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.893698036670685,"shapiro_p_value":2.29498153814234e-09,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of Curved Height to the width of the leaf at mid-curved-height, as measured perpendicular to the curved height line","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P37","phenotype_name":"Leaf circular","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.985788285732269,"shapiro_p_value":0.099792405962944,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the error resulting from a best-fit circle to the area of the leaf. Error is the average magnitude of residuals (Res) along the leaf’s perimeter, divided by the radius of the circle. Smaller values indicate that the leaf is more circular","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P39","phenotype_name":"Leaf obovoid","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.\r\n\r\nCalculated as: Obovoid = 1/2 * scale_ob(y) * (1 – w1/W + w2/W) If Obovoid > 0, subtract 0.4. Otherwise, Obovoid is 0","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.9951993227005,"shapiro_p_value":0.882347822189331,"phenotype_category":"Leaf traits","phenotype_scoring":"Obovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ob","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P40","phenotype_name":"Leaf width widest pos","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.987851679325104,"shapiro_p_value":0.177279740571976,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height at which the maximum width occurs to the Maximum Height","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24065","phenotype_name":"shoots 15d protocol a","phenotype_description":"Shoots were defined as leaf-like structures with strong greening, rounded edges and often covered with trichomes.\r\n\r\nProtocol a: -mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m^(-2) s^(-1); 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":130,"shapiro_test_statistic":0.303797006607056,"shapiro_p_value":3.52343599979036e-22,"phenotype_category":"","phenotype_scoring":"Manual count of regenerated shoots from root explants after 15 days on shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol a (see description).","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P34","phenotype_name":"Leaf shape index external II","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.889604330062866,"shapiro_p_value":1.36236510961396e-09,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of Height Midwidth to Width Mid-height","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24088","phenotype_name":"undefined structures 21d protocol a","phenotype_description":"Undefined structures were defined as structures in between roots and shoots (i.e. having characteristics of both).\r\nProtocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":130,"shapiro_test_statistic":0.378090918064117,"shapiro_p_value":4.02139711296015e-21,"phenotype_category":"","phenotype_scoring":"Manual count of undefined structures formed on root explants after 21 days on shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol a (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24031","phenotype_name":"root-like structures 15d protocol b","phenotype_description":"Root-like structures were defined as elongated white or transparent structures, often covered with root hairs.\r\nProtocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m^-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.859996914863586,"shapiro_p_value":1.13796999601234e-10,"phenotype_category":"","phenotype_scoring":"Manual count of root-like structures formed on root explants after 15 days on shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol b (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24071","phenotype_name":"root-like structures 15d protocol a","phenotype_description":"Root-like structures were defined as elongated white or transparent structures, often covered with root hairs.\r\nProtocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":130,"shapiro_test_statistic":0.721907198429108,"shapiro_p_value":2.20670141502181e-14,"phenotype_category":"","phenotype_scoring":"Manual count of root-like structures formed on root explants after 15 days on shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol a (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24028","phenotype_name":"shoot primordia 15d protocol b","phenotype_description":"Shoot primordia were defined as dome-shaped outgrowths with a purple or green colour and clearly organized cellular patterning, indicated by a smooth surface.\r\nProtocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.356788456439972,"shapiro_p_value":5.65777730764986e-23,"phenotype_category":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium.","phenotype_scoring":"Manual count of regenerated shoot primordia from root explants after 15 days on shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol b (see description)","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24068","phenotype_name":"shoot primordia 15d protocol a","phenotype_description":"Shoot primordia were defined as dome-shaped outgrowths with a purple or green colour and clearly organized cellular patterning, indicated by a smooth surface.\r\nProtocol a: -mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":130,"shapiro_test_statistic":0.468288779258728,"shapiro_p_value":1.06343522159599e-19,"phenotype_category":"","phenotype_scoring":"Manual count of regenerated shoot primordia from root explants after 15 days on shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol a (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24043","phenotype_name":"shoots 21d protocol b","phenotype_description":"Shoots were defined as leaf-like structures with strong greening, rounded edges and often covered with trichomes.\r\nProtocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 da","variation_type":"continuous","number_samples":149,"shapiro_test_statistic":0.440183579921722,"shapiro_p_value":1.66113841118434e-21,"phenotype_category":"","phenotype_scoring":"Manual count of regenerated shoots from root explants after 21 days on shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol b (see description).","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24025","phenotype_name":"shoots 15d protocol b","phenotype_description":"Shoots were defined as leaf-like structures with strong greening, rounded edges and often covered with trichomes.\r\nProtocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.440130710601807,"shapiro_p_value":1.21445976968955e-21,"phenotype_category":"","phenotype_scoring":"Manual count of regenerated shoots from root explants after 15 days on shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol b (see description)","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P23868","phenotype_name":"shoots 21d protocol a","phenotype_description":"Shoots were defined as leaf-like structures with strong greening, rounded edges and often covered with trichomes.\r\n\r\nProtocol a:\r\n7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":129,"shapiro_test_statistic":0.34535026550293,"shapiro_p_value":1.60151981282105e-21,"phenotype_category":"","phenotype_scoring":"Manual count of regenerated shoots from root explants after 21 days on shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol a (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P33","phenotype_name":"Leaf shape index external I","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.871214091777802,"shapiro_p_value":1.5077858406265e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the Maximum Height to Maximum Width","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P26148","phenotype_name":"area 21d protocol b","phenotype_description":"The area was calculated automatically in ImageJ by applying a colour threshold to distinguish explants from the background and subtracting the latter to obtain a 2D projection as a proxy for the regenerative potential.\r\nProtocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.755288302898407,"shapiro_p_value":1.39332032443227e-14,"phenotype_category":"","phenotype_scoring":"Area of root explants after 21 days on shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol b (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P25078","phenotype_name":"area 21d protocol a","phenotype_description":"The area was calculated automatically in ImageJ by applying a colour threshold to distinguish explants from the background and subtracting the latter to obtain a 2D projection as a proxy for the regenerative potential.\r\nProtocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":129,"shapiro_test_statistic":0.622875452041626,"shapiro_p_value":1.05678080430713e-16,"phenotype_category":"","phenotype_scoring":"Area of root explants after 21 days on shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol a (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P24048","phenotype_name":"undefined structures 21d protocol b","phenotype_description":"Undefined structures were defined as structures in between roots and shoots (i.e. having characteristics of both).\r\nProtocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m^-2 s^-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to SIM.","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.393364608287811,"shapiro_p_value":2.08776128021673e-22,"phenotype_category":"","phenotype_scoring":"Manual count of undefined structures formed on root explants after 21 days on shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid) following protocol b (see description)","phenotype_source":"Danny Geelen and Robin Lardon, HortiCell, Department of Plants and Crops, Ghent University, Ghent, Belgium."},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P33","phenotype_name":"SLA","phenotype_description":"The same full leaf that was used for morphometrics was dried in an oven for 3 days at 65ºC and weighed on a precision scale. SLA was calculated as the ratio between Leaf Area and leaf dry weight","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.936721086502075,"shapiro_p_value":1.0837692965282e-09,"phenotype_category":"Leaf traits","phenotype_scoring":"Specific Leaf Area (mm2/mg)","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P57","phenotype_name":"Leaf eccentricity area index","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":286,"shapiro_test_statistic":0.930187284946442,"shapiro_p_value":2.43672942934481e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the leaf outside the ellipse to the total area of the leaf","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P53","phenotype_name":"Leaf eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":286,"shapiro_test_statistic":0.832872152328491,"shapiro_p_value":6.83970237531681e-17,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the Maximum Height","phenotype_source":"None"},{"species_id":220,"species_name":"Helianthus argophyllus","dataset_id":344,"dataset_name":"H. argophyllus, SNPs remapped to HA412-HOv2","phenotype_id":"ARG rm220P69","phenotype_name":"Leaf curved height","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":285,"shapiro_test_statistic":0.989202976226807,"shapiro_p_value":0.032575398683548,"phenotype_category":"Leaf traits","phenotype_scoring":"Length measured along a curved line through the leaf (equidistant from both leaf borders; mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P105","phenotype_name":"Seed maximum height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.99517422914505,"shapiro_p_value":0.208233416080475,"phenotype_category":"Seed traits","phenotype_scoring":"Maximum length of the seed (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P103","phenotype_name":"Seed maximum width","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.997753083705902,"shapiro_p_value":0.844135999679565,"phenotype_category":"Seed traits","phenotype_scoring":"Maximum width of the seed (mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P109","phenotype_name":"Seed shape index external II","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.983230113983154,"shapiro_p_value":7.68268582760356e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of Height Midwidth to Width Mid-height","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P110","phenotype_name":"Seed curved shape index","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.983763635158539,"shapiro_p_value":0.000104478393041063,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P194","phenotype_name":"Leaf proximal eccentricit","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.812471747398376,"shapiro_p_value":8.29901763593684e-26,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the bottom of the ellipse and the top of the leaf.","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P106","phenotype_name":"Seed curved height","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.99499499797821,"shapiro_p_value":0.18416965007782,"phenotype_category":"Seed traits","phenotype_scoring":"Length measured along a curved line through the seed (equidistant from both seed borders; mm)","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P195","phenotype_name":"Leaf Distal eccentricity","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.829196095466614,"shapiro_p_value":8.77819467603814e-25,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the height of the internal ellipse to the distance between the top of the ellipse and the bottom of the leaf","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P185","phenotype_name":"Leaf shape index external I","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":599,"shapiro_test_statistic":0.869240462779999,"shapiro_p_value":5.64126726931893e-22,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the Maximum Height to Maximum Width","phenotype_source":"None"},{"species_id":218,"species_name":"Helianthus annuus","dataset_id":345,"dataset_name":"wild Helianthus annuus, SNPs remapped to HA412","phenotype_id":"ANN rm218P107","phenotype_name":"Seed HW ratio","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":426,"shapiro_test_statistic":0.98445999622345,"shapiro_p_value":0.000157088521518745,"phenotype_category":"Seed traits","phenotype_scoring":"Ratio between curved length and maximum seed width","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P64","phenotype_name":"Seed ovoid","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.\r\n\r\nCalculated as: Ovoid = 1/2 * scale_ov(y) * (1 – w2/W + w1/W). If Ovoid > 0, subtract 0.4. Otherwise, Ovoid is 0","variation_type":"continuous","number_samples":151,"shapiro_test_statistic":0.992620766162872,"shapiro_p_value":0.630353450775146,"phenotype_category":"Seed traits","phenotype_scoring":"Ovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ov","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P48","phenotype_name":"RGB proportion red","phenotype_description":"A evenly illuminated, representative section was selected for a digital image of a leaf for each line (see \"Leaf_perimeter\"). RGB values were extracted using the \"Color histogram\" plugin (https://imagej.nih.gov/ij/plugins/color-histogram.html) for Fiji (Schneider et al., 2012; Schindelin et al., 2012).\r\nRatio between values of R and R+G+B.","variation_type":"continuous","number_samples":200,"shapiro_test_statistic":0.974087417125702,"shapiro_p_value":0.000931859074626118,"phenotype_category":"Leaf traits","phenotype_scoring":"Proportion of red in average leaf colour","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P45","phenotype_name":"Leaf eccentricity area index","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.949672698974609,"shapiro_p_value":1.49266645621537e-06,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the area of the leaf outside the ellipse to the total area of the leaf","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P35","phenotype_name":"Leaf curved shape index","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.933360278606415,"shapiro_p_value":5.23749541514462e-08,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of Curved Height to the width of the leaf at mid-curved-height, as measured perpendicular to the curved height line","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P16","phenotype_name":"Disk diameter","phenotype_description":"Average of two perpendicular inflorescence disk diameter measurements performed on each of the first three inflorescences produced by each plant. Inflorescences were collected in the field, and front and back digital pictures were taken in the lab using a setup that provided even illumination. A size and colour standard was included in each picture. Measurements were taken using the Fiji software (Schneider et al., 2012; Schindelin et al., 2012).","variation_type":"continuous","number_samples":203,"shapiro_test_statistic":0.965587139129639,"shapiro_p_value":7.33542619855143e-05,"phenotype_category":"Inflorescence traits","phenotype_scoring":"Diameter of the inflorescence disk (cm)","phenotype_source":"None"},{"species_id":216,"species_name":"Helianthus petiolaris subsp. fallax","dataset_id":341,"dataset_name":"Helianthus petiolaris subsp. fallax. SNPs remapped to HA412-HOv2","phenotype_id":"PETfal rm216P58","phenotype_name":"Seed shape index external I","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":165,"shapiro_test_statistic":0.953597128391266,"shapiro_p_value":2.80731255770661e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of the Maximum Height to Maximum Width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P25","phenotype_name":"Leaf perimeter","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.986803114414215,"shapiro_p_value":0.132605105638504,"phenotype_category":"Leaf traits","phenotype_scoring":"Perimeter of an individual leaf (mm)","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P32","phenotype_name":"Leaf curvedHeight maxWidth","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.868945240974426,"shapiro_p_value":1.16599799260264e-10,"phenotype_category":"Leaf traits","phenotype_scoring":"Ratio between curved length and maximum leaf width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P60","phenotype_name":"Seed curved shape index","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.952933132648468,"shapiro_p_value":6.89844309818e-05,"phenotype_category":"Seed traits","phenotype_scoring":"The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P57","phenotype_name":"Seed HW ratio","phenotype_description":"At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in hermetically sealed box containing silica gel. Eight seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.","variation_type":"continuous","number_samples":147,"shapiro_test_statistic":0.95604020357132,"shapiro_p_value":0.00012753285409417,"phenotype_category":"Seed traits","phenotype_scoring":"Ratio between curved length and maximum seed width","phenotype_source":"None"},{"species_id":217,"species_name":"Helianthus petiolaris subsp. petiolaris","dataset_id":340,"dataset_name":"Helianthus petiolaris subsp. petiolaris. SNPs remapped to HA412-HOv2","phenotype_id":"PETpet rm217P44","phenotype_name":"Leaf shape index internal","phenotype_description":"The youngest, fully developed leaf from the primary stem was collected at anthesis and scanned on a flatbed scanner, at a resolution of 300 dpi. A size and colour standard was included in each picture. For morphometric measurements, colours were inverted in Adobe Photoshop to increase contrast. Images were analyzed using Tomato Analyzer (Rodrigues. et al. 2010); leaf boundaries were manually adjusted when necessary.","variation_type":"continuous","number_samples":161,"shapiro_test_statistic":0.947651147842407,"shapiro_p_value":1.07082023532712e-05,"phenotype_category":"Leaf traits","phenotype_scoring":"The ratio of the internal ellipse’s height to its width","phenotype_source":"None"},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P15232","phenotype_name":"BLUP aT","phenotype_description":"Tocopherols were extracted from 10-12 mg of mature, dry Arabidopsis seeds as described in Gonzalez-Jorge et al. 2013 (10.1105/tpc.113.119677). Individual compounds were resolved by chromatography at 30° on a 3-mm × 100-mm YMC C30 column with a 3-μm particle size (Waters, Milford, MA). Details of the HPLC mobile phases and flow rate are present in Lipka et al. 2013 (10.1534/g3.113.006148). Tocopherols were detected by fluorescence using 290 nm excitation and 325 nm emission and quantified relative to calibration curves with γ-, α-, and δ-tocopherol with commercial standards (Supelco).","variation_type":"continuous","number_samples":814,"shapiro_test_statistic":0.993793845176697,"shapiro_p_value":0.00192135805264115,"phenotype_category":"","phenotype_scoring":"alpha tocopherol mature seeds","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P15231","phenotype_name":"BLUP gT","phenotype_description":"Tocopherols were extracted from 10-12 mg of mature, dry Arabidopsis seeds as described in Gonzalez-Jorge et al. 2013 (10.1105/tpc.113.119677). Individual compounds were resolved by chromatography at 30° on a 3-mm × 100-mm YMC C30 column with a 3-μm particle size (Waters, Milford, MA). Details of the HPLC mobile phases and flow rate are present in Lipka et al. 2013 (10.1534/g3.113.006148). Tocopherols were detected by fluorescence using 290 nm excitation and 325 nm emission and quantified relative to calibration curves with γ-, α-, and δ-tocopherol with commercial standards (Supelco).","variation_type":"continuous","number_samples":814,"shapiro_test_statistic":0.990670442581177,"shapiro_p_value":4.97659239044879e-05,"phenotype_category":"","phenotype_scoring":"gamma tocopherol mature seeds","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P15233","phenotype_name":"BLUP totalT","phenotype_description":"Tocopherols were extracted from 10-12 mg of mature, dry Arabidopsis seeds as described in Gonzalez-Jorge et al. 2013 (10.1105/tpc.113.119677). Individual compounds were resolved by chromatography at 30° on a 3-mm × 100-mm YMC C30 column with a 3-μm particle size (Waters, Milford, MA). Details of the HPLC mobile phases and flow rate are present in Lipka et al. 2013 (10.1534/g3.113.006148). Tocopherols were detected by fluorescence using 290 nm excitation and 325 nm emission and quantified relative to calibration curves with γ-, α-, and δ-tocopherol with commercial standards (Supelco).","variation_type":"continuous","number_samples":814,"shapiro_test_statistic":0.990592241287231,"shapiro_p_value":4.57262685813475e-05,"phenotype_category":"","phenotype_scoring":"total tocopherols mature seeds (dT+aT+gT)","phenotype_source":""},{"species_id":1,"species_name":"Arabidopsis thaliana","dataset_id":7,"dataset_name":"1001 Genomes Data","phenotype_id":"AT1P15230","phenotype_name":"BLUP dT","phenotype_description":"Tocopherols were extracted from 10-12 mg of mature, dry Arabidopsis seeds as described in Gonzalez-Jorge et al. 2013 (10.1105/tpc.113.119677). Individual compounds were resolved by chromatography at 30° on a 3-mm × 100-mm YMC C30 column with a 3-μm particle size (Waters, Milford, MA). Details of the HPLC mobile phases and flow rate are present in Lipka et al. 2013 (10.1534/g3.113.006148). Tocopherols were detected by fluorescence using 290 nm excitation and 325 nm emission and quantified relative to calibration curves with γ-, α-, and δ-tocopherol with commercial standards (Supelco).","variation_type":"continuous","number_samples":814,"shapiro_test_statistic":0.994070470333099,"shapiro_p_value":0.00272774090990424,"phenotype_category":"","phenotype_scoring":"delta tocopherol mature seeds","phenotype_source":"None"}]