Detailed SNP View
Detailed information about the allele distrbution and its phenotypic values is shown, as well as dynamic linkage disequilibrium plots.
If available, gene annotations are shown in the LD plot.
Click here to see a live example: Demo
Comparison of GWAS Across and Within Datasets
User now can compare the results between public and private GWAS!
A live Demo can be found here: Live Demo
Pairwise Comparison of GWAS
Pairwise comparison of genome-wide association study results. All plots are dynamic. Users can hover with their mouse over any dot in the correlation map at the left. All other plots are automatically updated correspondingly.
The correlation map on the left shows all correlations between the phenotypes used for the individual GWAS.
The phenotype-phenotype scatter plot on the right shows all phenotypic values of phenotype x against all phenotypic values of phenotype y.
The sample overlap plot on the right shows the overlap of samples between the samples of GWAS x and GWAS y.
The phenotype-phenotype manhattan plot at the buttom shows the top 1000 association results of GWAS x and GWAS y.
Shared Associations between GWAS
The "Shared Associations" tab shows the top x SNPs for each GWAS experiment.
SNPs that can be found to be associated between different GWAS experiments are linked to each other.
Filled circles are significantly associated SNPs, whereas empty circles are not significantly associated.