General Information of GWAS
Summary Statistics

General GWAS Summary
Project: Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids (Seymour et al. 2016) Experiment Type Genome-wide Association Study
esayGWAS-ID:7de0da66-e5a6-4c31-8687-3b2c71c0447eOwner:dgrimm
Date Started:Nov. 21, 2016, 8:29 p.m.Date Finished:Nov. 21, 2016, 8:32 p.m.

Selected Species and Dataset
Selected Species: Arabidopsis thaliana
Selected Dataset: F1-Hybrids (Seymour et. al. 2016, PNAS)
Selected Gene Annotation Set: Gene Annotations (TAIR10)

Selected SNPs, Encodings and Filters
Selected SNPs: All SNPs selected MAF Filter:0.0
SNP encoding: Additive Selected Principle Components:0

Selected Phenotype
Phenotype Name: Area Day 29 Selected Transformation:None
Selected Algorithm: FaSTLMM Histogram:
Algorithm Details
Number of SNPs before Filtering: 204753 Number of SNPs after Filtering:204753
Number of Samples before Filtering: 372 Number of Samples after Filtering: 372
AIC Null-Model: 1880.32 AICc Null-Model:1880.33
BIC Null-Model: 1884.24
Variance Explained by the Null Model: 0.28

Publications


authorstitlepub yearjournalvolumepagesdoi
Robert J. Schmitz et al.Patterns of population epigenomic diversity2013Nature495193-19810.1038/nature11968
Matthew Horton et al.Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel2012Nature Genetics44212-21610.1038/ng.1042
Susanna Atwell et al.Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines2010Nature465627-63110.1038/nature08800
Christoph Lippert et al.FaST linear mixed models for genome-wide association studies2011Nature Methods8833-83510.1038/nmeth.1681
Quan Long et al.Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden2013Nat Genet45884-89010.1038/ng.2678
Jun Cao et al.Whole-genome sequencing of multiple Arabidopsis thaliana populations2011Nature Genetics43956-96310.1038/ng.911
Danelle K. Seymour et al.Genetic architecture of nonadditive inheritance inArabidopsis thalianahybrids2016Proceedings of the National Academy of Sciences113E7317-E732610.1073/pnas.1615268113
The 1001 Genomes Consortium et al.1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana2016CellNAN-A10.1016/j.cell.2016.05.063