| General Information of GWAS |
| Project: | Massive haplotypes underlie ecotypic differentiation in sunflowers (Todesco et al., 2020): H. annuus | Experiment Type | Genome-wide Association Study |
| esayGWAS-ID: | 1a30e7b1-0110-46f5-8833-8506af9a36d7 | Owner: | RiesebergLab |
| Date Started: | Aug. 3, 2019, 8:53 a.m. | Date Finished: | Aug. 3, 2019, 11:26 a.m. |
| Selected Species: | Helianthus annuus |
| Selected Dataset: | wild Helianthus annuus, SNPs remapped to HA412 |
| Selected Gene Annotation Set: | HA412-HOv2 Eugene v1 |
| Selected SNPs: | All SNPs selected | MAF Filter: | 0.05 |
| SNP encoding: | Additive | Selected Principle Components: | 3 |
Selected Phenotype
| Phenotype Name: | Stem diameter final after 5th node | Selected Transformation: | None |
| Selected Algorithm: | EMMAX | Histogram: |
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Algorithm Details
| Number of SNPs before Filtering: | 4887920 | Number of SNPs after Filtering: | 2664140 |
| Number of Samples before Filtering: | 583 | Number of Samples after Filtering: | 583 |
| AIC Null-Model: | 3761.92 | AICc Null-Model: | 3762.02 |
| BIC Null-Model: | 3783.76 | ||
| Variance Explained by the Null Model: | 0.34 |
Top 10 SNPs (Bonferroni Correction, 0.05)
