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Brief Summary
Experiment Type:
Genome-wide Association Study
Species:
Arabidopsis thaliana
Dataset:
1001 Genomes Data
Phenotype:
RL (ID: AT1P5949)
Algorithm:
FaSTLMM
Parameters:
MAF:
0.05
SNP Encoding:
Additive
Transformation:
BoxCox
Manhattan Plots
QQ-Plots
SNP Annotations
Summary/Downloads
Detailed SNP View (Chr1: 24338990)
« Back to Manhattan Plots
Download Detailed Table with Allele and Phenotype Information for SNP (Chr1: 24338990):
  Download Allele Table
Allele Information
Phenotypic Values for RL (ID: AT1P5949) [BoxCox transformed]
Linkage Disequilibrium (LD) Plot
Change Y-Axis to -log10(p-value) (Strength of association)
Change Y-Axis to R2 (Strength of LD)
Variant Effect Predictor (VEP) Effects (via
ENSEMBL REST Services)
(Chr1: 24338990)
x
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