What does the Summary Statistics file look like?


The first few lines in the Summary Statistics file normally begin with a # which indicates additional meta-information such as number of samples, which phenotype and algorithm was used, and others.
The line beginning with >contains the column information.

#n_samples=176												
#experiment_name=Experiment_6												
#phenotype_name=Leaf_serr_16												
#phenotype_id=91												
#algorithm_name=linear												
#snp_encoding=additive												
#phenotype_transformation=none												
#principal_components=0												
>CHR    Positions    P-Value    TestStatistic    Beta0    SEBeta0    Beta1          SEBeta1       MAF      SNP-Hash
Chr3    1387         0.00001    -0.00429         0.6718   0.032667   -7.11E-17      0.038305596   0.1818   11122
...