easyGWAS - Running GWAS easily over the web

We released easyGWAS version 2.9! An overview of all new features can be found here

Please cite easyGWAS when using it! How to cite easyGWAS can be found here

Publicly Available Studies or Data

New Arabidopsis thaliana Study

The genetic framework of shoot regeneration in Arabidopsis comprises master regulators and conditional fine-tuning factors (Lardon et. al., Communications Biology, 2020)

New Arabidopsis thaliana Study

Adaptive diversification of growth allometry in the plant Arabidopsis thaliana (Vasseur et. al., PNAS, 2018)

Arabidopsis thaliana

1135 accessions from the 1001 Genomes Project

Pristionchus pacificus

Linking genotype, phenotype, and environment in an island nematode reveals a genomic portrait of adaptive divergence (McGaughran et al.)

Arabidopsis thaliana

107 Phenotypes by Suzanna Atwell et al.

Arabidopsis thaliana

80 genomes by Cao et al. and AtPolyDB by Horton et al.

easyGWAS Statistics

Registered Users	14476
Public Projects	15
Public GWAS	585
Public Species	8
Public Datasets	12
Public Phenotypes	574
Performed GWAS	39603

Public GWAS

Browse all public genome-wide association studies. View results from pre-computed GWAS.

Public Data Repository

Browse all publicly available species, genotypes and phenotypes.

Perform a GWAS

Use the easyGWAS wizard to simply create new genome-wide association studies. The wizard leads you through every single step and helps you to easily create a new study.

Tutorials

The tutorial will guide you how to perform a GWA study. It will show you how to select the genotypes, phenotypes and algorithms.

Show Public Projects »

Show Public Data »

Create GWAS »

Take a Tutorial »

News & Updates

New Arabidopsis thaliana study

by Dominik Grimm at Oct. 16, 2020, 8:40 a.m.

Lardon et. al. published an highly interesting new study in Communications Biology about "The genetic framework of shoot regeneration in Arabidopsis comprises master regulators and conditional fine-tuning factors" (Link). The GWAS results can be found here: GWAS Results. Phenotypes are publicly available at AraPheno.

New Features Released

by Dominik Grimm at Oct. 21, 2019, 4:12 p.m.

We implemented some features, that have been requested by the community, including the download of allele and phenotype information from the Detailed SNP View. In addition, we deployed a variety of bug fixes and performance updates.

Maintenance

by Dominik Grimm at Aug. 30, 2018, 10:06 a.m.

easyGWAS will be offline on the 30th of August, 8 p.m. (CET) until the 31st of August 11 a.m. (CET) for maintenance and updates. We are sorry for the inconvenience.

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Publicly Available Studies or Data

New Arabidopsis thaliana Study

New Arabidopsis thaliana Study

Arabidopsis thaliana

Pristionchus pacificus

Arabidopsis thaliana

Arabidopsis thaliana

easyGWAS Statistics

Public GWAS

Public Data Repository

Perform a GWAS

Tutorials

News & Updates